G67562


Basic Information

Item Value
gene id G67562
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19830550 ~ 19830750 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80065
caaagTAGCAGATGCCGAGTGTCACTAGCTAAAACAGGAGCTGCAAGAACAAATATCTGTAATACCAGTGCATCATAGTACACCAAAACTGTACACTAGCATTGCTTACCTGTTACTATAAAGGGATTAATATTTTACTAGTTTTTGGGACACAGCCTTTTAATCACcatgatgaaaatgaattatttcgGTATGGGTGAT

Function

NR:

description
PREDICTED: transcription factor Sp3-like, partial

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU80065 True 201 lncRNA 0.37 1 19830550 19830750

Neighbor

gene id symbol gene type direction distance location
LOC113540494 ppp3ca,LOC106958666,LOC107084148,LOC106922390 coding downstream 198637 19543744 ~ 19631913 (-)
LOC117597194 NA coding downstream 294479 19523380 ~ 19536071 (-)
LOC113540415 ddit4l coding downstream 314230 19514154 ~ 19516320 (-)
LOC113539790 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 coding downstream 329307 19499187 ~ 19501243 (-)
LOC113539952 gps2,LOC106608669 coding downstream 334644 19487951 ~ 19495906 (-)
zdhhc21 zdhhc21,LOC107677703,LOC107691467,LOC107743939,LOC107739372 coding upstream 16832 19847582 ~ 19864051 (-)
LOC113540446 NA coding upstream 70664 19901414 ~ 19911059 (-)
si:ch211-212k18.7 LOC108267884 coding upstream 80983 19911733 ~ 19918428 (-)
amdhd1 amdhd1,LOC107683519,LOC107738078 coding upstream 122415 19953165 ~ 19957947 (-)
ndufs2 ndufs2,LOC107679282,LOC102781006 coding upstream 302009 20132759 ~ 20143530 (-)
G67535 NA non-coding downstream 5631 19769357 ~ 19824919 (-)
G67556 NA non-coding downstream 42002 19787961 ~ 19788548 (-)
G67527 NA non-coding downstream 174108 19605492 ~ 19656442 (-)
G67528 NA non-coding downstream 200601 19616448 ~ 19629949 (-)
G67454 NA non-coding downstream 490021 19328348 ~ 19340529 (-)
G67719 NA non-coding upstream 235313 20066063 ~ 20067059 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding upstream 296876 20127626 ~ 20132037 (-)
G67891 NA non-coding upstream 466572 20297322 ~ 20327561 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 728628 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 739649 20570399 ~ 20570930 (-)
LOC113540242 adamtsl1 other downstream 675329 19050150 ~ 19155221 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1990635 17792226 ~ 17839915 (-)
G66281 NA other downstream 2195682 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 2386362 17439477 ~ 17444188 (-)
G66053 NA other downstream 2428086 17400594 ~ 17402464 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 49218 19879968 ~ 19881640 (-)
G67587 NA other upstream 57429 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 88730 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 131832 19962582 ~ 19965851 (-)
znf16l LOC108268318 other upstream 947788 20778538 ~ 20825520 (-)

Expression


Co-expression Network