G67579


Basic Information

Item Value
gene id G67579
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19879978 ~ 19881739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80083
ACAAATGATGAgatgaaacatttatttcttgTCACTAATATTGCATTGTAGCTTACACTGATGAAAAAGGGAGTGTGTGTTCCAATGAACCTATGTATTTGCTGtataattgaaaatgaaaaaaaaaaaaaaaaaaaaaaaaaacattagtatGGGAAATTGCCAACACTGTGCATGTATCAACATCACTGCTGTTTCTGCTTTTCCCACTGCTCTGGCGTTAAGGTCTTCTGCTCAAAGGCATGTATCTCCTTCAGCTCAGTAGCAAGGCATGTGTTCACCACTGTGTCTCTGCAACAGTGGCTTTCCTTCAAACTGAGGGGACACTACAAGCACCTTAAAACTTGTAGCACATCTGTTGGGAGATGTGTCTTCTACTTCCTGAAACAGAACccaggtttttttaaataagcaatGCTGATGCAGTTACATCACTGATGCAATGATAAGAATTTAAGGAGATGACTTGTGGGTCAGAATCATATCCCTGTACCATCTATCAGCTGAACTGATCACAACATACCACGTGTATTGCACCAATTTCTGCTATCAGTTTTTCCCGAATGTGATCCATGGTAATCGCCATTTCGTCTTAAAATACGgactaaaattacacacaaaagGAATATAATCAATATAGCAAGTATTCCGGTTCACTACCGGCTGAGTAAAAGGGGCGGGAACAAACGCAGAAGAGTGTGAAACTGTCGAAGACAAGCGCAGGGCGCATCCTAAACGACTTCCTAATCCCTATATAAaagcactacatagggtatgagATCATTCTTTCTACGCTGTATGTAGTGCAGCATTGTTAAGAGCGATTTGTGATTTGAAACACACTGAGAGTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80083 True 853 lncRNA 0.40 2 19879978 19881739

Neighbor

gene id symbol gene type direction distance location
LOC113539773 LOC108267568 coding upstream 7829 19867151 ~ 19872149 (+)
LOC113539894 bank1 coding upstream 185462 19651897 ~ 19694516 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding upstream 394832 19481055 ~ 19485146 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding upstream 409016 19455026 ~ 19470962 (+)
LOC113540663 cpz coding upstream 472351 19394155 ~ 19407627 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding downstream 189 19881928 ~ 19886701 (+)
si:ch73-71d17.2 LOC108267752 coding downstream 62001 19943740 ~ 19953223 (+)
ntn4 ntn4 coding downstream 89572 19971311 ~ 19983277 (+)
LOC113540455 NA coding downstream 187322 20069061 ~ 20075035 (+)
LOC113540456 LOC108268101 coding downstream 200031 20081770 ~ 20087305 (+)
trnah-gug_5 NA non-coding upstream 51088 19828819 ~ 19828890 (+)
trnah-gug_4 NA non-coding upstream 51596 19828311 ~ 19828382 (+)
LOC117597044 NA non-coding upstream 55719 19821178 ~ 19824259 (+)
G67287 NA non-coding upstream 57130 19811964 ~ 19822848 (+)
G67289 NA non-coding upstream 113556 19764260 ~ 19766422 (+)
G67582 NA non-coding downstream 6439 19888178 ~ 19888725 (+)
G67594 NA non-coding downstream 30000 19911739 ~ 19914403 (+)
G67595 NA non-coding downstream 34861 19916600 ~ 19917169 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding downstream 80860 19962599 ~ 19965888 (+)
G67827 NA non-coding downstream 368319 20250058 ~ 20275675 (+)
G66864 NA other upstream 1021326 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1671414 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1736347 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1869016 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 2259899 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 108945 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 266056 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1138519 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1432479 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1747337 21629076 ~ 21640157 (+)

Expression


Co-expression Network