zgc:112271 (bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278)


Basic Information

Item Value
gene id zgc:112271
gene name bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19879968 ~ 19881640 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80085
CCGCCCCTTTTACTCAGCCGGTAGTGAACCGGAATACTTGCTATATTGATTATATTCcttttgtgtgtaattttagtcCGTATTTTAAGACGAAATGGCGATTACCATGGATCACATTCGGGAAAAACTGATAGCAGAAATTGGTGCAATACACGTGGAAGTAGAAGACACATCTCCCAACAGATGTGCTACAAGTTTTAAGGTGCTTGTAGTGTCCCCTCAGTTTGAAGGAAAGCCACTGTTGCAGAGACACAGATTGGTGAACACATGCCTTGCTACTGAGCTGAAGGAGATACATGCCTTTGAGCAGAAGACCTTAACGCCAGAGCAGTGGGAAAAGCAGAAACAGCAGTGA
>XM_026937102.2
ATAGGGATTAGGAAGTCGTTTAGGATGCGCCCTGCGCTTGTCTTCGACAGTTTCACACTCTTCTGCGTTTGTTCCCGCCCCTTTTACTCAGCCGGTAGTGAACCGGAATACTTGCTATATTGATTATATTCcttttgtgtgtaattttagtcCGTATTTTAAGACGAAATGGCGATTACCATGGATCACATTCGGGAAAAACTGATAGCAGAAATTGGTGCAATACACGTGGAAGTAGAAGACACATCTCCCAACAGATGTGCTACAAGTTTTAAGGTGCTTGTAGTGTCCCCTCAGTTTGAAGGAAAGCCACTGTTGCAGAGACACAGATTGGTGAACACATGCCTTGCTACTGAGCTGAAGGAGATACATGCCTTTGAGCAGAAGACCTTAACGCCAGAGCAGTGGGAAAAGCAGAAACAGCAGTGATGTTGATACATGCACAGTGTTGGCAATTTCCCatactaatgttttttttttttttttttttttttttcattttcaattataCAGCAAATACATAGGTTCATTGGAACACACACTCCCTTTTTCATCAGTGTAAGCTACAATGCAATATTAGTGAcaagaaataaatgtttcatcTCATCATTTGTTGGCCTGGAA

Function

symbol description
bola2 Predicted to enable iron-sulfur cluster binding activity. Involved in [2Fe-2S] cluster assembly and protein maturation by iron-sulfur cluster transfer. Located in cytoplasm and nucleus.

NR:

description
BolA-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80085 False 355 lncRNA 0.44 3 19880163 19881566
XM_026937102.2 True 624 mRNA 0.40 3 19879968 19881640

Neighbor

gene id symbol gene type direction distance location
zdhhc21 zdhhc21,LOC107677703,LOC107691467,LOC107743939,LOC107739372 coding downstream 15917 19847582 ~ 19864051 (-)
LOC113540206 nfib coding downstream 44010 19748276 ~ 19835958 (-)
LOC113540494 ppp3ca,LOC106958666,LOC107084148,LOC106922390 coding downstream 248055 19543744 ~ 19631913 (-)
LOC117597194 NA coding downstream 343897 19523380 ~ 19536071 (-)
LOC113540415 ddit4l coding downstream 363648 19514154 ~ 19516320 (-)
LOC113540446 NA coding upstream 19774 19901414 ~ 19911059 (-)
si:ch211-212k18.7 LOC108267884 coding upstream 30093 19911733 ~ 19918428 (-)
amdhd1 amdhd1,LOC107683519,LOC107738078 coding upstream 71525 19953165 ~ 19957947 (-)
ndufs2 ndufs2,LOC107679282,LOC102781006 coding upstream 251119 20132759 ~ 20143530 (-)
LOC113540737 NA coding upstream 262144 20143784 ~ 20143889 (-)
G67562 NA non-coding downstream 49218 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 55049 19769357 ~ 19824919 (-)
G67556 NA non-coding downstream 91420 19787961 ~ 19788548 (-)
G67527 NA non-coding downstream 223526 19605492 ~ 19656442 (-)
G67528 NA non-coding downstream 250019 19616448 ~ 19629949 (-)
G67719 NA non-coding upstream 184423 20066063 ~ 20067059 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding upstream 245986 20127626 ~ 20132037 (-)
G67891 NA non-coding upstream 415682 20297322 ~ 20327561 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 677738 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 688759 20570399 ~ 20570930 (-)
LOC113540242 adamtsl1 other downstream 724747 19050150 ~ 19155221 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 2040053 17792226 ~ 17839915 (-)
G66281 NA other downstream 2245100 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 2435780 17439477 ~ 17444188 (-)
G66053 NA other downstream 2477504 17400594 ~ 17402464 (-)
G67587 NA other upstream 6539 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 37840 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 80942 19962582 ~ 19965851 (-)
znf16l LOC108268318 other upstream 896898 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 1423052 21304692 ~ 21313897 (-)

Expression


Co-expression Network