G67594


Basic Information

Item Value
gene id G67594
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19911739 ~ 19914403 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80110
CAACATATTCCCTTTATTTTTTCTCAAAGTATCTTTTCAGAGATACATCACCAACTGTTGGAAAAATTTCAACCAGACAGCTTTACATACACAAAGTACAAGCGCAACATCTTCAAGCTAAATTTGCATATAATAAAAAGAACTAGAGATCATCATCcggtttaatatttaaaaataaggtgCTGTCAGTTTTGctccaattttttttcaagaccCCTCCGTCCAACCtaatgctttttttattatagcaGAAATCCCTAAAATCCTTTTGATCAAGACAGGAAACCTCATTTGCAATGTACATGCAGATATCAAAACCTTCCCTTATAACCTTAATGCTTGTAATATCAGTGCATAGGATTTAGAGACTCTATATTCCTGAGGATAGGTCACTTTAAAATGGCACAAAGTATAATCTACAAAGTATAATGTTTCTACAGAAATTAGAATACTAACTGAAAATTCTTCTGGTTAATGAGATTATTTTAAGTAATTTGCTTCTGATATTCTCACAGGGTGAGCCATTGAACTAGGATGAACCTAATTTGGGCAAGGGGAAGGGTTTTACATAAAAATCAGTTATATTACCCCATAGGCAGAATGAATAGCTGTTTTTTGAGATCTGCACTACACACTTGCTGATTATAATGTTTATGAGATCCAGCTGTCATTGTGGAAATCATAACGACTGGATTAAAGTCTAAGATATTTTAGTAGAGGCACCGTGGTGTAAATAGGGTGTCATCTTGACCAAACAGCTGGACATAGCTAGATATGATTTAAGACACTTGAGCACAGCGAAGCAAGCACAGGACAACAGTTTGAACACACAACAACGTggaaaatgaaactaagatttgatgtattttttaaactagcatTACAATATGCATTTGTGATCTCTTTTGATTTCACACCTTTAGTTGTTGTATTgtgcaccctataaaaggagcaGTTGCTGATGCCTGGATTAAATGTCAGTTTTTTTATGGAGCAAACCTCACCAGAACAAATCCAAAAGCAAGGTCTGCTTCATAAACTCATGTAAGCGTATCATGCTTGATTTAACTTGCgcagatgatggtgatggtgatgatgctgtCCTTTTATGAACTGCTCTGACGGATTCTCTCCATCAGAGAGTCTGGTAACCATCTGTTCTCCTTCTCCTACTGATGAGATAAGCCACGACtacgatgatgatgaggatgagcaGCACCACACCCACGCCAATGGCCACTCGGTAGTCTGGCTGGTTGGCCTTGCACATGTCAAGGGACCAAACTGGTTGCTGGTAAAGTTGAAGGCTTGCATCCTCTCCTTACTGAACTCCAGGTAGGCGCCATCACCCATGAAGACTGACTCTGATTTGCAGGAATAAGAGTGACTTGTTGCCATGCTGAACAGTTGCACCGATTGATTCGTCCtctccaaaattgacaaaactGAGGGAAAACAAGAACCTCAATTATCAATGTTTAAGTGCAGCCAAAATCATTAGAGTGCTCTAGATTTAATTCAGCATATCAGGTTGAAGCTTGTCTGtttctttttgtaattttcCACCCACGGAAATGAAACAAAGCTTTTTTGAAAGACC

Function

NR:

description
uncharacterized protein LOC111189836

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80110 True 1600 lncRNA 0.38 3 19911739 19914403

Neighbor

gene id symbol gene type direction distance location
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding upstream 25038 19881928 ~ 19886701 (+)
LOC113539773 LOC108267568 coding upstream 39590 19867151 ~ 19872149 (+)
LOC113539894 bank1 coding upstream 217223 19651897 ~ 19694516 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding upstream 426593 19481055 ~ 19485146 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding upstream 440777 19455026 ~ 19470962 (+)
si:ch73-71d17.2 LOC108267752 coding downstream 29337 19943740 ~ 19953223 (+)
ntn4 ntn4 coding downstream 56908 19971311 ~ 19983277 (+)
LOC113540455 NA coding downstream 154658 20069061 ~ 20075035 (+)
LOC113540456 LOC108268101 coding downstream 167367 20081770 ~ 20087305 (+)
LOC113539830 NA coding downstream 177484 20091887 ~ 20099077 (+)
G67582 NA non-coding upstream 23014 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 30000 19879978 ~ 19881739 (+)
trnah-gug_5 NA non-coding upstream 82849 19828819 ~ 19828890 (+)
trnah-gug_4 NA non-coding upstream 83357 19828311 ~ 19828382 (+)
LOC117597044 NA non-coding upstream 87480 19821178 ~ 19824259 (+)
G67595 NA non-coding downstream 2197 19916600 ~ 19917169 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding downstream 48196 19962599 ~ 19965888 (+)
G67827 NA non-coding downstream 335655 20250058 ~ 20275675 (+)
G67958 LOC108267586 non-coding downstream 566197 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 720945 20635348 ~ 20635565 (+)
G66864 NA other upstream 1053087 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1703175 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1768108 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1900777 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 2291660 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 76281 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 233392 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1105855 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1399815 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1714673 21629076 ~ 21640157 (+)

Expression


Co-expression Network