Gene
RNA
| Item | Value |
|---|---|
| gene id | G67642 |
| gene name | snrpf,LOC107738052,LOC107558408,LOC106609479 |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 19962599 ~ 19965888 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| snrpf | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP and catalytic step 2 spliceosome. Orthologous to human SNRPF (small nuclear ribonucleoprotein polypeptide F). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU80167 | True | 584 | lncRNA | 0.43 | 4 | 19962599 | 19965888 |
| TU80168 | False | 499 | lncRNA | 0.40 | 3 | 19962599 | 19965086 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch73-71d17.2 | LOC108267752 | coding | upstream | 9376 | 19943740 ~ 19953223 (+) |
| slx1b | LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 | coding | upstream | 75898 | 19881928 ~ 19886701 (+) |
| LOC113539773 | LOC108267568 | coding | upstream | 90450 | 19867151 ~ 19872149 (+) |
| LOC113539894 | bank1 | coding | upstream | 268083 | 19651897 ~ 19694516 (+) |
| LOC113540207 | eif5a,LOC107691471,LOC106608670 | coding | upstream | 477453 | 19481055 ~ 19485146 (+) |
| ntn4 | ntn4 | coding | downstream | 5423 | 19971311 ~ 19983277 (+) |
| LOC113540455 | NA | coding | downstream | 103173 | 20069061 ~ 20075035 (+) |
| LOC113540456 | LOC108268101 | coding | downstream | 115882 | 20081770 ~ 20087305 (+) |
| LOC113539830 | NA | coding | downstream | 125999 | 20091887 ~ 20099077 (+) |
| trnar-ucu_2 | NA | coding | downstream | 135137 | 20101025 ~ 20101098 (+) |
| G67595 | NA | non-coding | upstream | 45430 | 19916600 ~ 19917169 (+) |
| G67594 | NA | non-coding | upstream | 48196 | 19911739 ~ 19914403 (+) |
| G67582 | NA | non-coding | upstream | 73874 | 19888178 ~ 19888725 (+) |
| G67579 | NA | non-coding | upstream | 80860 | 19879978 ~ 19881739 (+) |
| trnah-gug_5 | NA | non-coding | upstream | 133709 | 19828819 ~ 19828890 (+) |
| G67827 | NA | non-coding | downstream | 284170 | 20250058 ~ 20275675 (+) |
| G67958 | LOC108267586 | non-coding | downstream | 514712 | 20480600 ~ 20481755 (+) |
| G68054 | NA | non-coding | downstream | 669460 | 20635348 ~ 20635565 (+) |
| G68070 | NA | non-coding | downstream | 726375 | 20692263 ~ 20693111 (+) |
| G68192 | NA | non-coding | downstream | 898990 | 20864878 ~ 20895955 (+) |
| G66864 | NA | other | upstream | 1103947 | 18856456 ~ 18858652 (+) |
| G66492 | LOC108267609,LOC108437090 | other | upstream | 1754035 | 18197312 ~ 18208564 (+) |
| frem1a | frem1 | other | upstream | 1818968 | 18113433 ~ 18143631 (+) |
| ctdnep1b | ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 | other | upstream | 1951637 | 18000158 ~ 18010962 (+) |
| LOC113539940 | NA | other | upstream | 2342520 | 17609492 ~ 17620079 (+) |
| dock11 | dock11,LOC107683516 | other | downstream | 24796 | 19990684 ~ 20067220 (+) |
| fcer1g | LOC100305060 | other | downstream | 181907 | 20147795 ~ 20154777 (+) |
| G68232 | LOC108267516 | other | downstream | 1054370 | 21020258 ~ 21033753 (+) |
| plag1 | plag1,LOC107570635 | other | downstream | 1348330 | 21314218 ~ 21323967 (+) |
| mettl4 | mettl4 | other | downstream | 1663188 | 21629076 ~ 21640157 (+) |
