snrpf (snrpf,LOC106609479,LOC107738052)


Basic Information

Item Value
gene id snrpf
gene name snrpf,LOC106609479,LOC107738052
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19962582 ~ 19965851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80179
GTTCAAAGGTCACTCGTTGTCCTTCCCTTTCCTGGCGGCAAGGCATGCGAGTGCGCTTCTGAAACAGATGCTTTTTGAatgaagaattatttttttggtATTGAAACCTGATTTACCTTTCTAAACATGagTTTGCCGCTGAATCCGAAGCCCTTCCTGAACGGTCTGACAGGGAAACCAGTGATGGTGAAGCTGAAATGGGGGATGGAGTACAAGGGTTACTTGGTCTCTGTGGACGGATACATGAACATGCAGCTGGCTAACACAGAGGAGTATGTGGATGGAGCTTTGTCGGGTCACCTCGGGGAGGTGTTAATCAGGTGTAACAATGTTTTGTATATACGAGGAgtagaagaagaggaagaggatggagagatgagagaaTAATGCGGGGTTATGGATTTGGGGTTAAAATGTATGGTTTAGTTTGTCTTAGCTGtatgtttagttttgtttcttttctttttttgtgaattcatGTGTTGGTTTTTTACACTATAAAAGCATAATTTCTGGCT
>XM_026936930.2
CTCTACGCTTCCGGTTCAAAGGTCACTCGTTGTCCTTCCCTTTCCTGGCGGCAAGGCATGCGAGTGCGCTTCTGAAACAGATGCTTTTTGAatgaagaattatttttttggtATTGAAACCTGATTTACCTTTCTAAACATGagTTTGCCGCTGAATCCGAAGCCCTTCCTGAACGGTCTGACAGGGAAACCAGTGATGGTGAAGCTGAAATGGGGGATGGAGTACAAGGGTTACTTGGTCTCTGTGGACGGATACATGAACATGCAGCTGGCTAACACAGAGGAGTATGTGGATGGAGCTTTGTCGGGTCACCTCGGGGAGGTGTTAATCAGGTGTAACAATGTTTTGTATATACGAGGAgtagaagaagaggaagaggatggagagatgagagaaTAATGCGGGGTTATGGATTTGGGGTTAAAATGTATGGTTTAGTTTGTCTTAGCTGtatgtttagttttgtttcttttctttttttgtgaattcatGTGTTGGTTTTTTACACTATAAAAGCATAATTTCTGGCTGCACAATGGTGCAaataaaattatgcattttgta

Function

symbol description
snrpf Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within spliceosomal snRNP assembly. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of U1 snRNP and catalytic step 2 spliceosome. Orthologous to human SNRPF (small nuclear ribonucleoprotein polypeptide F).

NR:

description
small nuclear ribonucleoprotein F

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11098 SNRPF, SMF; small nuclear ribonucleoprotein F

RNA

RNA id representative length rna type GC content exon number start site end site
TU80179 False 518 TUCP 0.42 4 19962616 19965838
XM_026936930.2 True 565 mRNA 0.42 4 19962582 19965851

Neighbor

gene id symbol gene type direction distance location
amdhd1 amdhd1,LOC107683519,LOC107738078 coding downstream 4635 19953165 ~ 19957947 (-)
si:ch211-212k18.7 LOC108267884 coding downstream 44154 19911733 ~ 19918428 (-)
LOC113540446 NA coding downstream 51523 19901414 ~ 19911059 (-)
zdhhc21 zdhhc21,LOC107677703,LOC107691467,LOC107743939,LOC107739372 coding downstream 98531 19847582 ~ 19864051 (-)
LOC113540206 nfib coding downstream 126624 19748276 ~ 19835958 (-)
ndufs2 ndufs2,LOC107679282,LOC102781006 coding upstream 166908 20132759 ~ 20143530 (-)
LOC113540737 NA coding upstream 177933 20143784 ~ 20143889 (-)
focad focad,LOC101469292 coding upstream 199860 20165711 ~ 20223868 (-)
LOC117597004 NA coding upstream 448074 20413925 ~ 20419029 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding upstream 459740 20425591 ~ 20444949 (-)
G67562 NA non-coding downstream 131832 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 137663 19769357 ~ 19824919 (-)
G67556 NA non-coding downstream 174034 19787961 ~ 19788548 (-)
G67527 NA non-coding downstream 306140 19605492 ~ 19656442 (-)
G67719 NA non-coding upstream 100212 20066063 ~ 20067059 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding upstream 161775 20127626 ~ 20132037 (-)
G67891 NA non-coding upstream 331471 20297322 ~ 20327561 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 593527 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 604548 20570399 ~ 20570930 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 18748 19919480 ~ 19943834 (-)
G67587 NA other downstream 73856 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 80942 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 807361 19050150 ~ 19155221 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 2122667 17792226 ~ 17839915 (-)
znf16l LOC108268318 other upstream 812687 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 1338841 21304692 ~ 21313897 (-)
G68462 NA other upstream 1360195 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 1388768 21354619 ~ 21371010 (-)
G68760 NA other upstream 1968675 21934526 ~ 21935169 (-)

Expression


Co-expression Network