G67757 (kirrel,kirrela,LOC108440115)


Basic Information

Item Value
gene id G67757
gene name kirrel,kirrela,LOC108440115
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20127626 ~ 20132037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80315
CTTTTATTTGATATactgtgaaaaaataattacataacatttttaaaaaaatattgggaaaaaaagataatgaaataaaaaaaatgaaaattcattaaCTTCTGTTGTACATCTGTAGAATGCTTCAACTATGAAGAACAGTACAGTAAGGTCAACATTTGCTTTCTAAGACACAAGTATACAGGATACAGTCCTACCAGCAGAATAAAAGTATTGGAGCAGGAACTTTAGGGAAGTAAAGGATTACATAAAGATATTTGTACACaaagagatacacacacactcacacacacgcacacatcatTCTCCTCCAGCCTTAAATTGGCATATAAAGTGTTGGATTATAAAAGTCATGTTTTCCTAAGgccactctttttttaaaatcaacacacatattcatatatCCCTCTTTTAGTCCTCATGGAGCTTCAGTCCTTTGAGAAGGAAGCTGGAGGAAGGTCATGTCCTCAAACGTAGGTTAGGTCATACCTCCCAGACACTTCTTTCTCTGTCAACTGCGCAAAGTAACCAAATGTACCATAAGGACATACTAATGGGCAGCACAGGCAGGTATAAAGGTGCTATCTGTTGATGATGAGCATCTTGTTCTGTTGAATGCTCTTTGGCACCGCACTAGACTCCAGCCAAGTATAATGAACAAAGCtcattattctgttttttttttgttttttttacaacaggtcataaaatctttaaaatccATTGCCAAACCTTAGTCCTTCTGCCAATTTTCCCTTACACTGTTGAAATGTAACAATACTGCATTTAAAGAGTGCATCACACtgaatgatataaaataatacttGAAATAGGAGTAACACATGGGAAAGTATTTACAAGACTCCTTCAATTGAAAGGCATTGAAACTCAGATGACAGGTGTAGACAGTACCTCACTGTTCCGTGATGGAGAACCATTATGAGACGGATTGTCTTCATTTTCACCATCGACATGATCATGATGTTTACATCCTTCAAAACCTGTCTGGTTTCATATCCATAGACCAAGTCTGACTTTTactggtcaaaaaaaaaaaaaaaaaatgcttcctcCAACTTAGGTGTCTGTGTTTGGCACAAGTAGCAGGTGTGTCTTTGTGATATCGTGTGTGGGAACAGTCCCCAATGTATTAGGTATTGATAAACTtcacataattatatatatgtataaacatTCTGTTCTCTGGGATAGACCCTGGGAACCCAAAACTGTCAAGAAATCCATCCAAGAACTGACAACAAGATCAGCTCCACTTGGTTCATTATGATGACTTACAACAAGGTGATGACATAGCAGCCTGATCTAAGATCAGTATGTGTACCTAAGGCTGGgtcataaatttttttaatcttttgcaGTCCCATACCCTTCAAAATACCTTTTTTGTCACCGTTATTACTGTTGAGTCcagaaacaacaaacacaaacaaatctgCATATTTCCTTGTTTGTTGAGGTGAATATCACCTAAATAAAGACTGACACTCTAACGATGAACCTTTGGTCCACAattctttacagaaatatgagagaaaaaaaataattctgtatttCGGGACTAGTCAAAACACTCTAGCCTAGTGTGCAAATGAGAGATTACAGGTAGATTATAAGGGTAATAATCTATGCTAGAATACTGGAATGCAGTGCAAACAATGACCCCACTACAAAGCACCATGGAAACGAGTGGGGAACTCAgacacatattatatatatagacacacatatactgtatatatacgcagctatactgtatgtgctcGAAGATCAACTAATCGCCATGtaaaaacaatttgaaaaaatatatggTTTACTATGATGCCCCTTTGCACATCCCACTATATACTCCACCAACTGATGTGCCAACCCAATGGTTTGTCCCATCAtgaaaagtaaaagaaagaaggagagaacgagtgaaagaaagaaaaatagctGTCATTGGCCATGGCTGATGGCTTCCTGAACTGGTCTCTTTTCCTTCCTTATGCGTCTATTTTTATATcaacaaaaatgttcaaaagtGCTTTAATTCAATGATACGAGTTGCAACTTCATTAATGAGAATGAAAGCATTCTGCCAGAGACAACTTTGTAATAAAAGGTAACTGAACCACATATTTTTTTGTACCTATAATTGTTCTAAATGATAAGGCTTGTAGCCCACTTCATGAGGTAGCTTAGCAATCTAGAATACCGACTAGATACTAATTAACAGGTAAAGCAGGTAAGTGTATTGACCTTTCATCACCTAGTGTCCAATTGATCACACATACTTTGTAGGGGTGTAACTACACACAGAATTCaaatctgacatgattttgATACGGTGGTGTCTCGATGcaatacattttcaatacagTGAAAATAAGCATTGTCTGAATATGTgtcttaggtttccattttccactgattaaaacattataaaagtacaataactgAAATGCAACaatgacagtgtttgtgtgatccattCAGACTTGTAGCagcatataaaaaaacaaaaactgtgcaTGAggatgtaataaaattaaatgtctaattaaacattagctctAGTTTCTCTGaagcacagttttttttttttttttaaatttcaaattcTGCTGTTGGATAGTTGTGCACTCAGTgtcacacagctctctgtagcGCAAACATGTTTTTGAATCCTGCGTTCTCCATTACCAAGCAGGGTCTCATATCTGCAGCTCCCAAACTCTGCTGTGATTTTCTGTAACCTGTACTAAATCAgcagagagatgtgtgtgtgtgtgtgtgcattgctgCGTGTTTTCATCTAGTTCTACCAACCGACACAGAAGCTTTAGGTCACTGGTCATCAGAGTTTTAAGTCACTGGGAATCCAAAGTGCTCCTGAACAACAAGACTTACAGATTTGTAGGAATTTTCCAGTTCCTGCTTGCTGTTGATGGTAGCCATGGCTGCTTTCCTTGAGCTAATATGCTAGTATGCTAGCGTATTAGCTCATGAAAAACAGAATGCTTAGCagaaaactgaactgaactgaactaagACTAGGCAGCCTGTTGAAAGTACTGACATATCGAATCGAGAGCCTCGTATCGAATGATAGAATATGATGTGccgtatcgttacacccctaatgcTTTGGTAACCAAGGATATATGGTCATATAGTGTTGTGCTTTGTTTGGTGCTTTGCTCATGGTTGATTGTGAGGAATTAATAAAATTCTGTAAGACTGTTTAGGACTCATCATTGAACCACTGTAAGTCTACTGTAGGTGTAATCTCTGTTATATTGCTTTCTTGTATTTGCCTTGTAAAGGTGTGGAGACGAGTTGAAGAAGCCATTAACAAGAATTCATACAAAAGTCTTCCATGACCACCGCTGCCATGTAGTTTTtgtcacagacagacacagaagctTTCATCAGTTCTCAAGATGTGTCTGTGGCCATGCTAACTCCAAGATATTCACACCTATACAGTCAGAATTTTGAAGATCTTAGATCCTTCATTAATGCTACTTTTTTTCATCTTGATTGTGACTTTCGCTATCAGCTCCTCGAGCTGAGGAAATAAGCAGAAAAAGCTGAAAAGAGAATTCCCTCATCTCTCAATTTCCCTCCCACTCTCTCTTCTGTGCTTTCTGATCTGATTCCTACCACTCATTCTCCCTTTCTTTACAACTTCCTCCTGTGTATGTTTGTGAGCATGTGgtcaagtgtgtgtgctgaagtgAGGAAGAGCAGCGCAGTGTGGCATTATGCTCCTCCTTCACACGTGCGTCtgcatcctctgtgtgtgtcggTGGGAATAGTCGGAATGCTGCGAGGTGTAGGAAAAGCGCGTGGAGCTACCATACTTCCCGAGTCCACTCTCCGGGGGTGCAGCAGTGCCTCCGACGCTTACACTTTGCCCCACGCTGTACATCTCATATGCTGCGCCGCTTTCTAATGGAGCGAGGCTGGGAGGAGCAAAGCCAAGACGATACGTAGGGTAGTGCGATGGGTAGCTGTAGTTCTCGTATGGTAACTGTGGTGTCGAGTCTAGGAGACTGCATTCAGCTGGAAAGTCGCCTGTCTGAGGCCCGGAGCTGGGCGGAGGCTGCTGAGACTGACTTGGTCTGCTGAAGGTGTTGAACTGGGCATAGCTGAGCCTGGAAGGAGGTCTAGGGTCATAGCAGCCAGCTCGTGACCCAGGAGCCAAGCTGCTCGGCGTTCCAGGACCTGCTGTAGCTCCAGTGCCTGAGCTACCACTAACAGTTGCAGCGCCGCCTGGTGCAGTGGCGGTCCGATAGTCAGAGTAGTGCATGGAGCGGGAGGCAGGACGGCCCTCGTCATGGGTGGAAGCCCGCACGTTGTAATA

Function

symbol description
kirrel Predicted to enable cell adhesion molecule binding activity and myosin binding activity. Acts upstream of or within several processes, including excretion; negative regulation of protein phosphorylation; and positive regulation of actin filament polymerization. Located in cell-cell junction; dendritic shaft; and plasma membrane. Is expressed in craniocervical region bone; glomerular tuft; lung; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in nephrotic syndrome type 23. Orthologous to human KIRREL1 (kirre like nephrin family adhesion molecule 1).

NR:

description
PREDICTED: kin of IRRE-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80315 True 4372 lncRNA 0.40 2 20127626 20132037

Neighbor

gene id symbol gene type direction distance location
amdhd1 amdhd1,LOC107683519,LOC107738078 coding downstream 169679 19953165 ~ 19957947 (-)
si:ch211-212k18.7 LOC108267884 coding downstream 209198 19911733 ~ 19918428 (-)
LOC113540446 NA coding downstream 216567 19901414 ~ 19911059 (-)
zdhhc21 zdhhc21,LOC107677703,LOC107691467,LOC107743939,LOC107739372 coding downstream 263575 19847582 ~ 19864051 (-)
LOC113540206 nfib coding downstream 291668 19748276 ~ 19835958 (-)
ndufs2 ndufs2,LOC107679282,LOC102781006 coding upstream 722 20132759 ~ 20143530 (-)
LOC113540737 NA coding upstream 11747 20143784 ~ 20143889 (-)
focad focad,LOC101469292 coding upstream 33674 20165711 ~ 20223868 (-)
LOC117597004 NA coding upstream 281888 20413925 ~ 20419029 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding upstream 293554 20425591 ~ 20444949 (-)
G67719 NA non-coding downstream 60567 20066063 ~ 20067059 (-)
G67562 NA non-coding downstream 296876 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 302707 19769357 ~ 19824919 (-)
G67556 NA non-coding downstream 339078 19787961 ~ 19788548 (-)
G67527 NA non-coding downstream 471184 19605492 ~ 19656442 (-)
G67891 NA non-coding upstream 165285 20297322 ~ 20327561 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 427341 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 438362 20570399 ~ 20570930 (-)
G68106 NA non-coding upstream 498129 20630166 ~ 20631710 (-)
G68107 NA non-coding upstream 503495 20635532 ~ 20635793 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 161775 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 183792 19919480 ~ 19943834 (-)
G67587 NA other downstream 238900 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 245986 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 972405 19050150 ~ 19155221 (-)
znf16l LOC108268318 other upstream 646501 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 1172655 21304692 ~ 21313897 (-)
G68462 NA other upstream 1194009 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 1222582 21354619 ~ 21371010 (-)
G68760 NA other upstream 1802489 21934526 ~ 21935169 (-)

Expression


Co-expression Network