G67827


Basic Information

Item Value
gene id G67827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20250058 ~ 20275675 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80393
GCATGAgtcattcttttaaaaatgtcattatctAAGGAAATGATCACATTGGTATGCGCTTGTACGTTGTGTTTTCTTGATTCTAGTTTTGTTCCAGGAATCAGACTGTGGCTGTGGATGTGACTTCATTTCCCTTTGTACTAGTTGGTTTATAGACAGAGTATAGCATGAATGACGCTGTTGATTGACAGCGAGCGGTTATACTGGAagttgtttaattaaaaagacCTGTTAGGATGTCCAGTATCAATCTAACTTGGCAGGGACTGAAAGGTTgtttatttcaAAAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80393 True 293 lncRNA 0.38 2 20250058 20275675

Neighbor

gene id symbol gene type direction distance location
hacd4 hacd4 coding upstream 83809 20159312 ~ 20166249 (+)
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding upstream 120594 20102481 ~ 20129464 (+)
trnar-ucu_2 NA coding upstream 148960 20101025 ~ 20101098 (+)
LOC113539830 NA coding upstream 150981 20091887 ~ 20099077 (+)
LOC113540456 LOC108268101 coding upstream 162753 20081770 ~ 20087305 (+)
c4h4orf54 LOC108268294 coding downstream 14122 20289797 ~ 20297146 (+)
trmt10a trmt10a,LOC107683564,LOC106608639 coding downstream 31455 20307130 ~ 20314066 (+)
nectin4a LOC108267696 coding downstream 42762 20318437 ~ 20332200 (+)
coro1b LOC108267697,LOC108440123,LOC107679286,LOC107597893,LOC107710519,LOC107683505,LOC107558435 coding downstream 58003 20333678 ~ 20345681 (+)
si:ch211-119e14.1 NA coding downstream 73753 20349428 ~ 20351877 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 284170 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 332889 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 335655 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 361333 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 368319 19879978 ~ 19881739 (+)
G67958 LOC108267586 non-coding downstream 204925 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 359673 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 416588 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 589203 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 912856 21188531 ~ 21189134 (+)
fcer1g LOC100305060 other upstream 95281 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 182838 19990684 ~ 20067220 (+)
G66864 NA other upstream 1391406 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2041494 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2106427 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 744583 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1038543 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1353401 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1476741 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2374135 22649810 ~ 22652447 (+)

Expression


Co-expression Network