G67891


Basic Information

Item Value
gene id G67891
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20297322 ~ 20327561 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80460
tttaaaaacagagatACATACCTGTTACTTCTATTTTCACTTCCACTCTCCCAGACCCCACAATATTGGAGGCTACACATTCATACGCTCCCTTGTCTGTTAATCTAAGAGGCCTGTCAAATCGCAATACTTCCTTCTCCATGGTCACGCCATCTGGTAAACCGCCATCTTTCCTGTGTAATGGACAAATATTGTAATATGCATATTTCAACTTAAACTGAACAGCAGAAGTTACATGGAGAGAGGTAGTACACACCATTCAAGATTCAGCAAAGATCCAATTtccattcattatttttaattcacacATCATGAACTATGCTTCTTTTCTACAGTCTCTGGAAATTCAAGGAAGTTTGTGGAAAATGCTGTACATGATGTTTTAAATGATGCACAGATAAGTTTGCATAAAGACAGCAAGAGAACTGTTGTATGTCATCCTGTTTACTCATTCACCTACAGACATGTTGCTCTATGACTATTGCTGTTGACTGAACTCTCTAAACAGAGACAGTAATTTTgaattttcattgttttctttaagCAAGTCAGTTAAGCAAATCATACTAGGGAGGGCATATAAAATGAAAGGAGggtaaataaaaatctatgaaatTCTGTAAAAACTCTCCTCCTTTGAGACCTACTATCTCTAGCCCTGTAACTAGGCTGTGGTCCGATGATCTGCTTTCAGCTAAACAATTACATTAATGTAGGTGAATGACCGCAACAGATGATTTGCTAAGAAAACCAAGCTGGTTTATGAAAACTAGAGTTGCTGAACTAcagcctgtttttttcttatatgtTTATCTCTGCTACAGTCTTCAATTACTCAGTTCGTTAGGCTGAAAAACTTTGCTGGGTCCACATACGGAACCCAGTCCACCAGTTCATGACCCCCGCCAAAATAATAACctaaacatataatataatataaacatatttatacaacagttagttccagtccactaatttgattggttgagaggCATTCCATgagtgcctatatttcctataaccacactgggatgttttactgtgtgtatcactccgcccATTTGTGTTTGACATGTAAAATTAcacttcctagtttgaaacagttactacagcagtgttagtgacatcatcaacggACATGGGCATaagatacttttcaggaatataacttttggatTAAAATATGAACGCTCATcagttgaagatgaaaaggaagaagggatgccaattttatgcgaagcacctttaacaggaatgtacaaatcagtgtgagctagctagcgagCCAGACGACGtactataaagtgagtgtggcttcttcaagATCTAGTTccgctagcggagcaaaaataaacagaaaatttggccatattgtgtccaaaatgtcactcatATTAATGGCACTTACACGATATTAATTTCTCGTTTATAGAACtcttgtataaaagcaatattccGCTTGCAGttgtgcagttatactgaatattgacACTCACCCTGTGGCTCATACCTGCGgtgaatcacagccatgccaatattcagtataatcgCACTCTTGCTCTtctgatattgcttaaatataatatatataaacatataaaagaaaacatatttgAATTGTcagcatttatatttttgttttcacaaaGTATGAAATTAATGGCTGTTTcattctaatattattattgctttttatATGACATGTGCAATTGGTTTTCATTAATGACTTTATCAGGAAGACCTGTACATCAGCCAATTACTGTCAATATTTACTTGAAAACTGCTGCTTTCTGTCAATGAATCTGTAATAGCAGTCTGGAGAGTGTGTTCATTGTTTGATGTAGTCTGATGATATTTGTGGTTCATCTTTCATGTGGCCCAGTAGCATTTTGTAAACTTTGATCTTCAGCTGTATTACATAACTTAATAGGTGAGATGACTACATTTACTCACTGTCATTATACATATCAAATACACAAACTTGATTCATGGCATTAATTGCCAGTAGCAAGCATTCAGGATTGTTTATGATTCTGCTTTAGTGACTTTTGGCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80460 True 2054 lncRNA 0.36 2 20297322 20327561

Neighbor

gene id symbol gene type direction distance location
focad focad,LOC101469292 coding downstream 73454 20165711 ~ 20223868 (-)
LOC113540737 NA coding downstream 153433 20143784 ~ 20143889 (-)
ndufs2 ndufs2,LOC107679282,LOC102781006 coding downstream 153792 20132759 ~ 20143530 (-)
amdhd1 amdhd1,LOC107683519,LOC107738078 coding downstream 339375 19953165 ~ 19957947 (-)
si:ch211-212k18.7 LOC108267884 coding downstream 378894 19911733 ~ 19918428 (-)
LOC117597004 NA coding upstream 86364 20413925 ~ 20419029 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding upstream 98030 20425591 ~ 20444949 (-)
men1 men1,LOC107679288,LOC107731945 coding upstream 119695 20447256 ~ 20455462 (-)
si:dkey-106g10.7 LOC108267586 coding upstream 151699 20479260 ~ 20485658 (-)
ecsit ecsit coding upstream 170119 20497680 ~ 20504408 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding downstream 165285 20127626 ~ 20132037 (-)
G67719 NA non-coding downstream 230263 20066063 ~ 20067059 (-)
G67562 NA non-coding downstream 466572 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 472403 19769357 ~ 19824919 (-)
G67556 NA non-coding downstream 508774 19787961 ~ 19788548 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 231817 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 242838 20570399 ~ 20570930 (-)
G68106 NA non-coding upstream 302605 20630166 ~ 20631710 (-)
G68107 NA non-coding upstream 307971 20635532 ~ 20635793 (-)
G68108 NA non-coding upstream 308343 20635904 ~ 20636199 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 331471 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 353488 19919480 ~ 19943834 (-)
G67587 NA other downstream 408596 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 415682 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 1142101 19050150 ~ 19155221 (-)
znf16l LOC108268318 other upstream 450977 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 977131 21304692 ~ 21313897 (-)
G68462 NA other upstream 998485 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 1027058 21354619 ~ 21371010 (-)
G68760 NA other upstream 1606965 21934526 ~ 21935169 (-)

Expression


Co-expression Network