G67958 (LOC108267586)


Basic Information

Item Value
gene id G67958
gene name LOC108267586
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20480600 ~ 20481755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80554
aaaaaaaaaaaatctttgaaatgCATGGAACTGTTCACTCTACACACAGTGTGTGCTTTACAAGGTGCTGCTCTAGAAGTCATGCTTCATACCAGTTCCCTTGGCCCCCCCATACCAAGTGCTTTGTTAAGTGCTGAATGTGCGACCCACTGCATTGCTGACCCCATGCAAAACGATCCCTCTGGTACTTTAAACCCTGCAATTTGCAGCAATCAATAAATCTCACCAAAgactgcactgtacaaatacGGACGCATAAAAAAGTgcttagggggaaaaaaggtccTTCATTCTTATTCAGGCCATTGACATCATTCCTCTGTAGGAAACAACTTTACATTTCTCCACCTCCAAGCAGATCACTGCTTACTAACAGAAACCATGTTgtgaaatcaaacaaacaaaaaagtgcaCAAAGAAAACTGTATCAAGCTTACATTCTCAACTAAAAAGCTgcagagatcatatttttgGCTTGTTCCAGCAATCTTCTTCCTGAGTGCAAGAAAGCATGCCACAACCCCCACCGTTCATTAAACCTGGTCGATCTCAGCGTTAGTGTTAGTCTGTGCTACGTGACCATGGTCCGagcctgagaaacagttatctgaGTGAATGAAGTGTAGCGTCGCTTGGGTGTAGCTCTGCACTGCCTGCTGTTTCTCCTCGGGACTGTAGTTCAATGAGTGAGGGTGGACTTGCTGGATGTGCCTCTTGATCGTGCTCACCTTCAGAGTCGCTAACGTGGCGCCGCACACCATGCAGATCAGCCCGTGCCTCCTGCAGTCGTAGTCCATCAGGTACTCCATGCGCCAGCGTACCTGGTAGTTACGCCGCTGATCCTTGCCTGGGTAGTGGCTGTGTCGCCCGATAATGGGCGCTgacatgacctttgacctctctccATCTTCCTTCTGGATGCCACGCTGCCTGGTGGATGGTTTTATGGACAGCGTCTTGCTTTCAACAAGTGCGTCACTGGGGGCAGCTTTTGCTGAGACAGAGAGGAGTGGTCAATCTAAAGTGCTAATAATGTACCAAATTTCACTGCAGGAGTGAAATTTATGTCTATTGcatatgattcattttatgGATTAAAGGAATAGTCTAGTTTTCTTTTCAGCCTAATCTCTATTTACTgcatatatacatgtgt

Function

NR:

description
PREDICTED: uncharacterized protein C11orf95-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80554 True 1156 lncRNA 0.46 1 20480600 20481755

Neighbor

gene id symbol gene type direction distance location
rtn3 rtn3,LOC108267754,LOC108440822,LOC103032175,LOC107679257,LOC107731898 coding upstream 803 20458841 ~ 20479797 (+)
rgs12a LOC108268015 coding upstream 68944 20378775 ~ 20411656 (+)
msantd1 msantd1 coding upstream 102730 20374263 ~ 20377870 (+)
dtx4a dtx1,LOC108267695,LOC108440124,LOC103026639,LOC107558401,LOC107731926,LOC107597891 coding upstream 108224 20352720 ~ 20372376 (+)
trnaa-cgc NA coding upstream 128115 20352414 ~ 20352485 (+)
si:dkey-28a3.2 LOC108267583 coding downstream 3889 20485644 ~ 20496755 (+)
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107660723,LOC107709062 coding downstream 23009 20504764 ~ 20544748 (+)
mta2 mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444 coding downstream 67925 20549680 ~ 20565417 (+)
cth1 cth1,LOC108268299,LOC108440851,LOC103030689 coding downstream 86151 20567906 ~ 20570053 (+)
taf6l taf6l,LOC107660726,LOC107679290,LOC107731936 coding downstream 88616 20570371 ~ 20577481 (+)
G67827 NA non-coding upstream 204925 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 514712 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 563431 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 566197 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 591875 19888178 ~ 19888725 (+)
G68054 NA non-coding downstream 153593 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 210508 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 383123 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 706776 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 723990 21205745 ~ 21209324 (+)
fcer1g LOC100305060 other upstream 325823 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 413380 19990684 ~ 20067220 (+)
G66864 NA other upstream 1621948 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2272036 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2336969 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 538503 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 832463 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1147321 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1270661 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2168055 22649810 ~ 22652447 (+)

Expression


Co-expression Network