G68054


Basic Information

Item Value
gene id G68054
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20635348 ~ 20635565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80678
tggccctTGAGTGTGTACATATAAAAAGCCTTGCAGGTGTAAATGCAATTCTGAGGCATGGCCTGGTCTCTGTATTTAGTTCCTGTTTCTCTAGTTTCTTGGTTGCATAATTACTTGTTTTTGCCTAGCTCACTACTTTTTAgttcattgttttcttttttttttttttaaaaagaaatcctgACATCCCTGAGTAAAGAACATTGCTTattcaaaag

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU80678 True 218 lncRNA 0.35 1 20635348 20635565

Neighbor

gene id symbol gene type direction distance location
ehbp1l1a LOC108267830 coding upstream 4362 20587612 ~ 20630986 (+)
LOC113539982 LOC108267206,LOC108440832 coding upstream 53336 20579774 ~ 20582012 (+)
taf6l taf6l,LOC107660726,LOC107679290,LOC107731936 coding upstream 57867 20570371 ~ 20577481 (+)
cth1 cth1,LOC108268299,LOC108440851,LOC103030689 coding upstream 65295 20567906 ~ 20570053 (+)
mta2 mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444 coding upstream 69931 20549680 ~ 20565417 (+)
si:ch73-40a2.1 LOC108267785 coding downstream 1663 20637228 ~ 20649186 (+)
rab1ba rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007 coding downstream 17010 20652575 ~ 20660555 (+)
rce1a rce1,rce1a,LOC107683501,LOC107731886,LOC107679240,LOC107710076 coding downstream 47143 20682708 ~ 20692222 (+)
cd248a LOC108268330 coding downstream 100262 20735827 ~ 20739174 (+)
LOC113540687 LOC108267189 coding downstream 207779 20843344 ~ 20846978 (+)
G67958 LOC108267586 non-coding upstream 153593 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 359673 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 669460 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 718179 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 720945 19911739 ~ 19914403 (+)
G68070 NA non-coding downstream 56698 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 229313 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 552966 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 570180 21205745 ~ 21209324 (+)
G68313 NA non-coding downstream 598460 21234025 ~ 21234258 (+)
fcer1g LOC100305060 other upstream 480571 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 568128 19990684 ~ 20067220 (+)
G66864 NA other upstream 1776696 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2426784 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2491717 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 384693 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 678653 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 993511 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1116851 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2014245 22649810 ~ 22652447 (+)

Expression


Co-expression Network