G68070


Basic Information

Item Value
gene id G68070
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20692263 ~ 20693111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80695
TctaaaatatagtaaaatctCTCTTATTAGAATGATAGAACATTTATAGGAACTTATTTTGTCTGCTCACTTGTCAGTGAAGGTAGGGAGAGCAGAAGCATGGCACTTCAATGACTGATTACCTGTGGAACTGAATTATTTCAGTAGTTTTGTCTATGGTTAGTGTGTATCAGGCCTGGTCTCTTGTGGCATAATCTTAAGCTCTTCCTAGcgttggaaaacttactgttctTTACCTAATGTAGGTTTCTAGGGTGGGATTTTTGTGATCTTCTGTTCAAAGCAGTTCTTGTTGCATAGTCTCAAATTGATTTGAAAACATTGTTTGAAAAGTGTGTTCCTTATGTCCACTGCTCATTTGctctctggatttttttttttttttttctcttgcttacacttttaaaaagtgatttGCAAGCCAGATATTTACATCTGAAGATTTGAATCTTCACTTGAGCAAAGATGCTTTATATATACACCCATGGACAGGAGGAGCAATAGAcattagaatttattttttcaaatacacAATGCTAGGTTCTATTTCAGTAGGATAACAGTAAGCAGGGTTTGGACTAAGGAACACTGCTACACaaatgtgctgttttataaCTTGTAATTATCAATAGTCAAATATCAGATGTTTATACTGAGgactatattttataatcaaatgTATTTTGGTGTCACATGGAAGGTTAATGTACATGCAAGATGTTTTTGACCAAGGCCATGTGCAATGCAGTTAACACACTGAAGGACAAATATTTTTTGACAATCTTTTGGGG
>TU80696
TctaaaatatagtaaaatctCTCTTATTAGAATGATAGAACATTTATAGGAACTTATTTTGTCTGCTCACTTGTCAGTGAAGGTAGGGAGAGCAGAAGCATGGCACTTCAATGACTGATTACCTGTGGAACTGAATTATTTCAGTAGTTTTGTCTATGGTTAGTGTGTATCAGGCCTGGTCTCTTGTGGCATAATCTTAAGCTCTTCCTAGcgttggaaaacttactgttctTTACCTAATGTAGGTTTCTAGGGTGGGATTTTTGTGATCTTCTGTTCAAAGCAGTTCTTGTTGCATAGTCTCAAATTGATTTGAAAACATTGTTTGAAAAGTGTGTTCCTTATGTCCACTGCTCATTTGctctctggatttttttttttttttttctcttgcttacacttttaaaaagtgatttGCAAGCCAGATATTTACATCTGAAGATTTGAATCTTCACTTGAGCAAAGATGCTTTATATATACACCCATGGACAGGAGGAGCAATAGAcattagaatttattttttcaaatacacAATGCTAGGTTCTATTTCAGTAGGATAACAGTAAGCAGGGTTTGGACTAAGGAACACTGCTACACaaatgtgctgttttataaCTTGTAATTATCAATAGTCAAATATCAGATGTTTATACTGAGgactatattttataatcaaatgTATTTTGGTGTCACATGGAAGGTTAATGTACATGCAAGATGTTTTTGACCAAGGCCATGTGCAATGCAGTTAACACACTGAAGGACAAATATTTTTTGACAATCTTTTGGGGGTCTTTCAAATCACTCATCAAAAACTGTTGTTTGCAAATAAACTTAATtttataaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80695 False 791 lncRNA 0.34 1 20692263 20693053
TU80696 True 849 lncRNA 0.34 1 20692263 20693111

Neighbor

gene id symbol gene type direction distance location
rce1a rce1,rce1a,LOC107683501,LOC107731886,LOC107679240,LOC107710076 coding upstream 41 20682708 ~ 20692222 (+)
rab1ba rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007 coding upstream 31708 20652575 ~ 20660555 (+)
si:ch73-40a2.1 LOC108267785 coding upstream 43077 20637228 ~ 20649186 (+)
ehbp1l1a LOC108267830 coding upstream 61277 20587612 ~ 20630986 (+)
LOC113539982 LOC108267206,LOC108440832 coding upstream 110251 20579774 ~ 20582012 (+)
cd248a LOC108268330 coding downstream 42716 20735827 ~ 20739174 (+)
LOC113540687 LOC108267189 coding downstream 150233 20843344 ~ 20846978 (+)
pde5ab pde5a,pde5ab coding downstream 159633 20852744 ~ 20893531 (+)
arsj LOC108267195,LOC108436153,LOC107730122,LOC107698664,LOC559800,LOC107559837 coding downstream 218539 20911650 ~ 20926058 (+)
camk2d1 LOC108267517,LOC108436151,LOC107732596 coding downstream 242574 20935685 ~ 21012256 (+)
G68054 NA non-coding upstream 56698 20635348 ~ 20635565 (+)
G67958 LOC108267586 non-coding upstream 210508 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 416588 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 726375 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 775094 19916600 ~ 19917169 (+)
G68192 NA non-coding downstream 171767 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 495420 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 512634 21205745 ~ 21209324 (+)
G68313 NA non-coding downstream 540914 21234025 ~ 21234258 (+)
G68435 NA non-coding downstream 623144 21316255 ~ 21316515 (+)
fcer1g LOC100305060 other upstream 537486 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 625043 19990684 ~ 20067220 (+)
G66864 NA other upstream 1833611 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2483699 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2548632 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 327147 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 621107 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 935965 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1059305 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 1956699 22649810 ~ 22652447 (+)

Expression


Co-expression Network