G68075 (mta2,LOC107597904,LOC107660724,LOC107709145)


Basic Information

Item Value
gene id G68075
gene name mta2,LOC107597904,LOC107660724,LOC107709145
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20559378 ~ 20566758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80702
TCCTCTTCAAATTATCTCACTACTGGAGAACAAGCAGTAAGATGGGCCTTGTCCAAAATCACATAATGCCACACTCAGGAACCCCATGGCAGTGCTGATGTATTATATTGACATGTTATTCAATGCAGTAGTATGTGGGATGGGACAAAGTCAGCCTCTTGTATATAAAACTGGCGACTCATTTCGGTGGACAGGTCAacgtttattttaaattttaatgtgcAGTGCACGCTCAGTTTAAGAAACCTTACAAAAACCCCAACACtaggggagggaaaaaaaaaaaaatgtacaagagAATATTGTGTAGAGCTCATTCAGTGGTTGGCAAATCACCCAGTGAATGagaaatccattcattcattcattaagaAGCACAAATGAAACCATAAATGAGGACATGATTCAATATCAAAGGAGTCTACAACCTATTAGAGCCATTACTAAGAACCCAATCTTACATCATAGGCAAAGAAAAAtgtcctttctttctcacttttctAACTACATTATCTAGTCACTACGTTACCTTACAGGCAGTGCCATTTTGTAGGTAAGCCGCTGGATTACATTAAGTTCTGTCCCTCTTGGCAAACACATAAATGAAAACTTACAACTGTATggctttgtttattatttcatagATACAAAGGGCAAGaaataaaagaccaaaaatgaGGCAGAGGCTGAACTGATTGTGAGACCAATCATTTACTGctaagaaaacaaaccaaaaaaaaaaacctgaagaaCCAGAAGCTGCCACAGGGTTTCTCTGACCAACCTCAACCCACCCAGCTCCCTCCCACCACTTCGTTCTAACACCTTTTTCCTTGATTTACACTGGATACATTGATAACGGGCTATCAGCATTCTGTCACCGTTTGCACttagaaaacatttcaaatagGTGTCTCCAACACATCAGCGAACATCAAATGTGTTGTTtgtaattatttcttattatagaGAAACGAGAAATCACATATTgaacaagaaaacacaaaagagaGGAGAATGGGGCCATAAATAAAAGCCCTCCTGAACTTCAATCCACCGATCCACGTCACATGGAGTAGAGCCGACCTCGATGCTGTTGTGTGCCCTGTGGTCTAGTTGAGCTCTTTTAAGGATTAGTCAACAGACTGGGGTAAACAGAATAAAGCCACTAAAAGAAACACTACAGGTTTCCAACCATTAGATTGACTATAGTGTGAAGAAAAGGAGCACTTACATACTGAATTTGTttaaacaaagagaaagaacaaataaGAGACATGCCAGACTCCCCCTCCCCAATCCCCCCCCACCCCGAAAACCCCTCCCCTTACCACACCAGCATTAAAGATATCACTcctgaaaaatgttaatatttacacaaataaagaTAGACCTGGaggacaaaaataaagtgtgctTTATCACCATCATTTCATGTTGCGCATTATCAGATTTAAattacacagttaaaaatattcggcattaaaaaaaaaagaggaaggggAGGGGAATAACCTATACtacaagaataaaacactacaaagTCCATTATGAAAGCCTgatgtgtgctgctgtgtcatTATGTGGGGCATAAACTGATCTGTGTGCATATGTTTCTTTATGAAGCTCACAGGTTGAATGATCGCATGGAAAAGTGAACAAGAAAATATGGACAggcaaaatatatttgtaagataaagaaaaaaatgattgagAGGGGAAGACAGAGcacagatttttttgtgtggaacaaaggggaaaaagaaaggagggCATAAAGATGGGGAGATGTGAGGTGATGCAGCCTAAAAGAATTGTCATTAGTCCTCCAGTACGATTGGCTCGCTGGTGCTAGAGGGCAGAACGGGGACAGGAATTGGCCGTGGTGGCAGAGGAAATTTCACTCTGACAGGGATGTTGGGTTTCCTAGCTGCTCGTCTCATTTCACCCTGAGAAAGGTGTTTCCTCAGGGCCCTgggTTTCTTTAGTAGCCACAAAGACTACAGGATTTGGGGCATCTGCCTGACTAACTCTCTGGCGCTTTATGACCGATTGAGCGGTCGTCCGCATGCCGCTCATAAAGGGCCTCCCATTGGTGGAGAACGAGTGTCCTCCCCCCTGCAGGAAATAGGGTGAGCATGGTCAAAGACTCAGTGGTGCAGTATATCTAAGACATCTAAGAcaaactgagagacagagagagaagagagagagacagacaaaatcaAAGAGAGAACGCGAGAGCTTACACTATCGAAGGGTCTCTTGCCAAGCAGGGCAGTTGCACTGCGGGGCTGGTTGGCCTGGTTACGGTTGATTGGGGTGGGAGCACCTCTAGGAGCTTTGAGTTTAAGGGGAgcctggacagctgaagaccagaaacacacacttagtACATCACTCATATTACCAACCCCAAACAAGTCTGGTTCATGTATACCAATAAGAAACTCACCCAATTCTTTGACTATGTTAACAAGAGATGGTCGTGGAACAGGACGGTTCTTTATAGCACTTTTTGCTACTTTAGGGAGTCTGATCATACctaaaggacagaaaaaaaacaatattgtgCAGTGAATATGAATGATGCAATTTTGCACTGTGAGTTATATGAAAGGCAATTTACTATAAACTGATTAACTATTGATCACAATATCAGTATGATAGAAACCCTCTATAAAATCACTATGATGTAAATCCCTCATGGTGATAATGACCTATGGTGATACCAATATTAAATGCACTACTTCTACAGGGTTTAGGGCTCTCTAGAAGTGAAGCACACTTTGAAGTTTTAAAGTGCTTGTGTCAGTGCAAAGGCTGAGGTGTGGTGAACACGGTACACTTACACTCTGCTTTGACAGCATTGGCGTTGATAGATGCATAAGGGCGGCGGGCAGCACGACGTGACTGCAGGATGTCCTGGCACACTCGACGGGCGATGCGGGTCAGCTTGGTGGTCTGCAGAATAAATGTCTGCCGATTTTTAGCCAAAAGCTTGGCTCTACCGGCATTATTAGTGAACGGGGACATGCCCTGCACTTCCTGACGAGTCATGTGACTACGTGAGGGTGCGTCCTATCGCAGGACGAGAGGTCATAGTTAGCAAAAGGTTCAATATTGGATTGCGtataaaattacagtaatattGGTAGACATGGCATACCGAGCCAGCTCTTGTAGCGCCCTCTAACTGAGTGGGTGTCTTCAGCCCACCATACTTCTTCCAGTAAATCCAGCAGGAGGCGCAGAGTCGACACTGCATGTTAGGAGGACCCCAAGCATACCACTGAGGAGACTGAGCAGCTGCAGCAGACCAGAGGAAAAGTCAACTttaaatgcatgcatgcatgcataacAGTAAATCCTAAACTCATCTGTAAACATGACCACATTCATAGTACTATATAAAGTTCTAATATCTGTaagtaacatttataaaagcaGTTTTATACTCGATATGTGACTTTGTTTGCGCAtacagaagcagcagcaacGCAAGTGGCACATACTCGACTCCGTAATTTATGGACATCTGGGGGATTAAAAGTGAAGTCCACAGATGGCATGTCAGAGCCCAAACATTATATTCGAAAGTATTTACTattctagaaaatccagaagactggtatgcaaaacagtcttcaaacctactgaaaggtctATGttagaggtttttaaaattcaaacactaaacGTAATAAGAAAACCAGTATAATCCAGCCTTAATATAATGCAGTACAAGTCTAAAACAAATCTGCATCATTGGTGACAAGGTAGAGTAAATGTGATTGCAATAATTTGGTACTCACTATGGCAGCTCTCGCAGCACAGGCCTTTTTGAAAGCCTGCAGCTCCGTTCATGCCGGGTTTGTTACCAGGAGCCATAATCTGGTTAGGGTTGGGCTTGGTGCTGGTGACGACAAAATTCCAATTCAGTTTTCAAATAAAGATCAAATTCAGATCATATTTAGAGCAGCGACAGAGTCTGTCTATTTTTAAACAGACAAGACTAAAGTGTTGCATcagtaatatataaacatataatgacaaataaactACCTACAAGTGGATGAGTAGGAAAATGTCAAATACTTAAGTTAGATTAAAAATAAGGTTCATCAACCCAAGCAGTCGCTACACTCACTTTACCAAAAACAGTTAGTGTTATTTCAGTAAATACTCACTAGGTGGGGATGTAAACCTGTTTCAGTTTACTGTCTGCTTCTGCTGCCTTCAGTCTTTTCTGAAATTGAAGAACCAAAAACACTGTTAGCTGCTATCTGAACCTTAATGAATTCAGTCAATACAAAACAGGACAGAACAAGACAAAGTCGTAAAAAAGCACACAATACTAAAGGCTCACCTGCTGAATGTAACGGTCTGTGGTTTTCCACATGTAATAGAATTGAACAACACTGGCTAAAGACTTCCAAGGCAactattaaaacaaaacaaatgaataaacaggCAACATTATAAAAGCATTCCAACCACAGTACCAATGGAAATCCCTTTCAGGCTTTCCAATACCATATCTACAGGAATTGTGCAGATGAGTAAGGCAAACAAGTAGGAGCTTGTGAACTCACAAAGTCCTGGCGAATGTCATTGAAGTCCTTTCCATACTTCTCTAGTGCTTCCTCGAACAACATGGCTTCCGAGGCACTCCACTCTTCCATCTCGTCACGGCAGAGCACGGGGCCGCCCTGCGGCACCAGCGTGGACATGGCCTTGGCCAAGTCATAACCATTCTTCTGCAGTGTGTCCATAGCGTGGAACTGGGAAGCGAAAAAATTACTTATGTGCTGAGTAAATGAGAGGCGCATATAAGATTGCAATAAAACCATATTGCGTGTGTGTACACAGCATTTCcacgtgtatgtgtatgcatgcatgtcCTCTCACCAGGGTGATGTCTCTGGATGCAGCTGCTGCACTCATGTGCAGACTTGGCTGGCGGATGGAGCTGCTGCAGTCTAAGGCACGGGCAAAAGTCCCCACAGCCCTGCAAAGGTAATACCATATGTGAAGAATGATTTTACAAGTATCTAAGGTATGCCAGAAATGTTGCAGGTTATACAATCCTATTTCAATACTTGGCatgaaattaatgaaacaaATACTTTCCACATTGTTGTTAAGGGTGAATTTACATGCTCAtgtaaaatattgcaaatatattGGCATGATACACATCATGCCTTACAAATGTCATATAATGTCTCATTCTCAGCTTGTAACTGGAACAGagcaacacatttttaagtAGTATGCAAAAGACAATTACTAAATCCATATTAAGTGTTCTGAGAAACTGCCTTGGTCTACCTAGAACCCACATACCTATAGATTAAGAGCACCCTTCTCCAGCTAACTCATTTACCCACTCAAACAACCTACAGTTTTCATAAAACAATACTGCAAACTGattactataacagcatcttATACACAACACTACAGTCCTCTGTACAACacagttcagtgtgtttcatAATATAGCATTCAACAGTGCACTGTACTGCAATGTCATTACAATGTTTCATTGGAATGGAAAGCAAAACAGGTTACATCTCAATTTTCTCCTTACTGCTACATTACCCCTAacttctttaatattttaataatgaaatgtactAGATTGAGGAATTACTGAGTTCTGACTATGTTCTCCGTGGTAACAGCACCAAGTTGTGAACAGATGGTGGGTGTGAACACTGACTCACCGGGCCACCACCAGGAACTGATCTATCTGAGAGTCCTTCAGCTGGTTATCCGGATCCCATACCTTCGTCTCCAGTTTCTCTTGTACTCGATTGTCCGAGTCCCCTTTAATGGGACAGTAATGAGTTTATGTCAGGTTATGCTTGGCTACCATAATAGATTATATTGATCAGTTCTGACAGAACTTTACTCCTCACCTTCTGCCAATTTGTCAGGAATCTCAGCCTGATATTTGGAGCCCACCCTGATCTCGCCCTGGTCAGCCAGCAGGGTTTTCTGAACCGGGTCAAACACCAACGAGTAGAAGAAACAGTCCTGCAGAGCACAAAACCACATAAAAATCCACTAAACCTACTGCTAAGCATGGTACAATGCTAGTCAGATTTCTGTAGAATTCCCACATTGTTTATAATTATTCTTCTATCTTACCTCTCTCTCTAGGTAGCCTGTTAAAACATCAGTCTCATTCAGAAGTGTGACGTTACATTTCCCCCTGTGGAGAAACACTAATACAAGTCAGACAAACTAGAAAACATCACATGATTAACCTGCTTGGAATACTTAGAAttagctttttctttttacattttatacacacacacacacacacacacacacacacacaatatggccaGATGTTTGTGAGCAGTTTGTGTGGGTCTTCcttaaactgttgccacaaagtaggAGGCATCTGATTATCTAGATCAGGGTTTGTCCAAGCcaagatcagctgattaaacaggtggaatcaggtgtagcctctgcttgattggaatgaaaacctgcacccacactggcttTTTGTGGATaggattggacacccctggtctAGAATgcctctgtatgctgtagcattaagactTCCCTTCACTTTGGACTAAGGGCCACAAGCCTGTTCCAGcctgacaatgcccctgtgcacaaaccgagctcaatgaagacatggtttgtcaaggctggagtggaagaactcaagtggcctttatagaaccctgacctcaacacctttaaaatgaactggaacaccgactgtaAGCCAGGCCTCTTCGCCCGagatcagtgcccaacctcactaattttcttttgtttctgaatgggcaaatccccacatccatgctccaaaatctagtgtaaatccttcccagaagagtggaggtggttacagcagcaaagaggggactaaCTCCATATTACTGCCATGActttggaataggatgttcaaaaagcacatatgggtatcatggtcaggtgtccacatacttttggccatatagtgtacatataaaaacaaaattgtttGCAGATTAAGgctaacttaaaaaaaaatggcataagGAAAACACTGAGTTTCTGGCATGTGCGACAAAGAAAGATGTTCACCGTATGTGTGTGGCAGGAAGAGACTCAAACTGTCGGGACAGGAACAGTTCTCTGTGTTTCAGCTGGTGTTTctgttgatcagtgattggtggcTGCTTGGACTCCTCCTCAAAGTCTCCTGGGg

Function

symbol description
mta2 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Acts upstream of or within fin regeneration. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA2 (metastasis associated 1 family member 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80702 True 7237 lncRNA 0.42 2 20559378 20566758

Neighbor

gene id symbol gene type direction distance location
ecsit ecsit coding downstream 54970 20497680 ~ 20504408 (-)
si:dkey-106g10.7 LOC108267586 coding downstream 73720 20479260 ~ 20485658 (-)
men1 men1,LOC107679288,LOC107731945 coding downstream 103916 20447256 ~ 20455462 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding downstream 114429 20425591 ~ 20444949 (-)
LOC117597004 NA coding downstream 140349 20413925 ~ 20419029 (-)
peli3 LOC108267165,LOC108440836,LOC107731914,LOC102800049,LOC103027529,LOC100695529 coding upstream 94968 20661726 ~ 20677144 (-)
sstr1b LOC108268319,LOC108440852,LOC557645,LOC107558412,LOC107683583,LOC107597921,LOC107679244 coding upstream 189118 20755876 ~ 20768426 (-)
LOC113539812 NA coding upstream 269003 20835761 ~ 20838098 (-)
mad2l1 mad2l1,LOC107730133,LOC107698665,LOC107680902,LOC107732594 coding upstream 328683 20895441 ~ 20899092 (-)
ank2b ank2,LOC103361685,LOC108436150,LOC108267515 coding upstream 445494 21012252 ~ 21160774 (-)
G67891 NA non-coding downstream 231817 20297322 ~ 20327561 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding downstream 427341 20127626 ~ 20132037 (-)
G67719 NA non-coding downstream 492319 20066063 ~ 20067059 (-)
G67562 NA non-coding downstream 728628 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 734459 19769357 ~ 19824919 (-)
G68080 NA non-coding upstream 3641 20570399 ~ 20570930 (-)
G68106 NA non-coding upstream 63408 20630166 ~ 20631710 (-)
G68107 NA non-coding upstream 68774 20635532 ~ 20635793 (-)
G68108 NA non-coding upstream 69146 20635904 ~ 20636199 (-)
G68186 NA non-coding upstream 236659 20803417 ~ 20804104 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 593527 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 615544 19919480 ~ 19943834 (-)
G67587 NA other downstream 670652 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 677738 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 1404157 19050150 ~ 19155221 (-)
znf16l LOC108268318 other upstream 211780 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 737934 21304692 ~ 21313897 (-)
G68462 NA other upstream 759288 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 787861 21354619 ~ 21371010 (-)
G68760 NA other upstream 1367768 21934526 ~ 21935169 (-)

Expression


Co-expression Network