G68080


Basic Information

Item Value
gene id G68080
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20570399 ~ 20570930 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80707
GTCGCTTCTCTGAGGCGGTAACACACGTCCTCGGCGAGCATCGAGGCTAACTCCTCACCCAGCTCGACCCCGGCGCTCTCCGCCATCAGTCTGATGGAGTCTCGGGATACTTCAGCGAAACGACGCTCTTCTCTACTCTCAGTCATCTTCACGATAAGCGTCCAAACGCAAACACGGTCAGCTTTTCAGCTTTAATAAGGTGCTAACGTAGAGCATCACATAAGGAGAGCAGGCGCTgcactaTATAGACCAACCAGGagtttataaatgtgtaaagaaAAACCCCAGAAAAGTACCCCAAGACAGCAGCTACACCGAGAAATTCACTGCTTTTAACAACGCTAGTTAATCTGGTAGCTTTTCACCCGTCTTATTAGTCAGGGTTCGGATATTAGGAAATACACGAACTTCTTGCTGTCCATTTGCCAAGTTAATCTCTACCTTTTAGCTTTCGATGTGCGCCATATTCCAtcacttcaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80707 True 481 lncRNA 0.47 2 20570399 20570930

Neighbor

gene id symbol gene type direction distance location
ecsit ecsit coding downstream 65991 20497680 ~ 20504408 (-)
si:dkey-106g10.7 LOC108267586 coding downstream 84741 20479260 ~ 20485658 (-)
men1 men1,LOC107679288,LOC107731945 coding downstream 114937 20447256 ~ 20455462 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding downstream 125450 20425591 ~ 20444949 (-)
LOC117597004 NA coding downstream 151370 20413925 ~ 20419029 (-)
peli3 LOC108267165,LOC108440836,LOC107731914,LOC102800049,LOC103027529,LOC100695529 coding upstream 90796 20661726 ~ 20677144 (-)
sstr1b LOC108268319,LOC108440852,LOC557645,LOC107558412,LOC107683583,LOC107597921,LOC107679244 coding upstream 184946 20755876 ~ 20768426 (-)
LOC113539812 NA coding upstream 264831 20835761 ~ 20838098 (-)
mad2l1 mad2l1,LOC107730133,LOC107698665,LOC107680902,LOC107732594 coding upstream 324511 20895441 ~ 20899092 (-)
ank2b ank2,LOC103361685,LOC108436150,LOC108267515 coding upstream 441322 21012252 ~ 21160774 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding downstream 3641 20559378 ~ 20566758 (-)
G67891 NA non-coding downstream 242838 20297322 ~ 20327561 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding downstream 438362 20127626 ~ 20132037 (-)
G67719 NA non-coding downstream 503340 20066063 ~ 20067059 (-)
G67562 NA non-coding downstream 739649 19830550 ~ 19830750 (-)
G68106 NA non-coding upstream 59236 20630166 ~ 20631710 (-)
G68107 NA non-coding upstream 64602 20635532 ~ 20635793 (-)
G68108 NA non-coding upstream 64974 20635904 ~ 20636199 (-)
G68186 NA non-coding upstream 232487 20803417 ~ 20804104 (-)
G68466 plag1 non-coding upstream 749888 21320818 ~ 21321146 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 604548 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 626565 19919480 ~ 19943834 (-)
G67587 NA other downstream 681673 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 688759 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 1415178 19050150 ~ 19155221 (-)
znf16l LOC108268318 other upstream 207608 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 733762 21304692 ~ 21313897 (-)
G68462 NA other upstream 755116 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 783689 21354619 ~ 21371010 (-)
G68760 NA other upstream 1363596 21934526 ~ 21935169 (-)

Expression


Co-expression Network