znf16l (LOC108268318)


Basic Information

Item Value
gene id znf16l
gene name LOC108268318
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20778538 ~ 20825520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80832
GTCGGCGTTTCAAAGAGCTCGGcaacctgtacacacacatgcgcattCACAGTGGCGCCACACCCTATACATGCTACCAGTGTGGTCGAAGCTTCCGACATTTAGGGACTTACAAAAGCCATCGCTGCACCCCCATTACACAGGTACCCAGTGCACACGGTCCAGCGTGGCCTCAAGAGGACAAAGTCCAAACTGGATAAATAGAATTCTGCTAGCTTTGTTAAGTAAGGCACTGTAGTGCTACGTTTCTTCTTCAGCAGATGTTTGAGGAATATCTAACCTCAGTTGCGAGgatgctaaatgctaaatgttATGGACAGAGATAGGACacttaaaaaaggaaagaaagacgtGGCCCATTTCTGCAATCTCATTTCGGGTTCAGGTATGCTGAAACCTTCAGTAGGACAGATAATATAAAGAATCTGATTAGATCAGGTCCTAAATCGGATGTTAATGTAGAGCAGATGGGTTTGATGTGAAGGAGGAGACAACTTGAAGTGAGGAGAAATTAGCACATGCTGCTTTAACCCAGGTTTgtttaggaaaaaaGACAACTTGAAGTGAGGAGAAATTAGCACATGCTGCTTTAACCCAGGTTTGTTTAGGAAAAAAGACATACAGCATTAAAATATTCTCACATTTAATATGGACTGTGTTTCCAAAACAGTGAGCATGCATGTTGATTTGTGAGAGTAATAG
>XM_026935805.2
ACGTCATAACGCAAGCGGAAGTTGTCAAAACTCTACGGTGTTGGAGCATCGAACGTTCAAAACAGTGCATTATTTTGACGCTATGAGCCGTAAAAGAAATCACAGTCTGATTGAAACGGGGCAGCTGGCTGAGTCTCAGGCCGCGCTGATGGACAGCACAGGGCCCTCTGGCCGAGCGGAGGAGAGCTTCTGCGAGCTGGAGCTCGATGAGGAGCTGGTGTGTTCAGTCAGTGAGATCACCGAGCACCTCGGCAGGAACATCACCGTGGCGCTGGAGGAGGCCCTGTCCGAAATCCGCAAAGTAGTGAGCGCACGAACCAGGCTCCTGAAAATGGAGCTGAGGGAGAAGACAGATGAGATCGAGCTGCTCAGAGCCCGGCTGGAGTGTGTGGCCAGCGAACCGGCCAGGAAAGCCGACTTCCTCCAGGCGCCACAGAAGAGCAGCAGCACGGAGCCAAAGAAAGCCAAAGCGGCCGCTCCTGCTGTCAAAAAGGAGAACATCGACGCCATCTGCGACTATCTGATGAAGGACAAGAACTCTCGCGGAGGAGCTGAGGTGGAGAGCGAGCGGCAGCACCAGGCCTCACTCAGCCCCTGGACCGAGAGCGAGGACATCTTCAGCATGTTGCCCTCCGCCAGCAAGAGACTCTACGATTATGAGTGGATGTCTGGAGTGGAGCTCAACTCCACCTCTGACTATAAAGGTGAATCGGAGTCCAAGTGTGAGAATGCTATAGCTGCAAGAGCGACAGCTGAAGAAGAGTCTGAAGAAGGGAGAGGGATGGGGCCGGTCTCGGATGATTCCTCTGCTCCGTTTGCTCTGGATGCTCACGGCTCGCCAGAGGACGAGAACAGCAGCCCAGTGGAGGACAGCATTGACCGATTAGATCCAGacCAGCACTTCTCTGCCCCTACCTTCATCTGCCCCTTCTGTGGAACCCTCTGCCCAGACTCGTCGTTCCTGGAGGAGCACATGAAGCTGATGCACCGAGATGAGAGCGCTCAGGCTGCTCAGTCTGGCTCGTCTTCCAGCGGTGGGCAGGGCAGCGAGGGAGAGGTGTGGCGGAAGGCAAGCTCTAGTGACTCCCAAGCTCGTGAGAAGAAGGTGGAAGGTGGCTACGAGTGCGGAGACTGCGGCCGCCGCTTCAACTACCTGGGCAACCTGCGGCAGCATCGGCGCATCCACACAGGCGAAAAGCCGTTTGTGTGCTCTGAATGTGGTGAGAGATTCCGGCACGCCGCTCGCCTCAAGAGCCACCGGCTCAGCCACAGCGGCGCGCAGAGCCCCTTCCCATGCCCGCAGTGTGGTAAGGGCTTCCCCGTGCTCTCCGGTCTTAAACGACATCAGCGTGTGCATACAGGCGAAAGCCCCTACGCGTGCCCCCAGTGCGGTCGGCGTTTCAAAGAGCTCGGcaacctgtacacacacatgcgcattCACAGTGGCGCCACACCCTATACATGCTACCAGTGTGGTCGAAGCTTCCGACATTTAGGGACTTACAAAAGCCATCGCTGCACCCCCATTACACAGGTACCCAGTGCACACGGTCCAGCGTGGCCTCAAGAGGACAAAGTCCAAACTGGATAAATAGAATTCTGCTAGCTTTGTTAAGTAAGGCACTGTAGTGCTACGTTTCTTCTTCAGCAGATGTTTGAGGAATATCTAACCTCAGTTGCGAGgatgctaaatgctaaatgttATGGACAGAGATAGGACacttaaaaaaggaaagaaagacgtGGCCCATTTCTGCAATCTCATTTCGGGTTCAGGTATGCTGAAACCTTCAGTAGGACAGATAATATAAAGAATCTGATTAGATCAGGTCCTAAATCGGATGTTAATGTAGAGCAGATGGGTTTGATGTGAAGGAGGAGACAACTTGAAGTGAGGAGAAATTAGCACATGCTGCTTTAACCCAGGTTTGTTTAGGAAAAAAGACATACAGCATTAAAATATTCTCACATTTAATATGGACTGTGTTTCCAAAACAGTGAGCATGCATGTTGATTTGTGAGAGTAATAGTACTACACAGCTgtt

Function

NR:

description
PREDICTED: zinc finger and SCAN domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80832 False 702 lncRNA 0.42 2 20778553 20816280
XM_026935805.2 True 2045 mRNA 0.54 3 20778538 20825520

Neighbor

gene id symbol gene type direction distance location
sstr1b LOC108268319,LOC108440852,LOC557645,LOC107558412,LOC107683583,LOC107597921,LOC107679244 coding downstream 10112 20755876 ~ 20768426 (-)
peli3 LOC108267165,LOC108440836,LOC107731914,LOC102800049,LOC103027529,LOC100695529 coding downstream 101394 20661726 ~ 20677144 (-)
ecsit ecsit coding downstream 274130 20497680 ~ 20504408 (-)
si:dkey-106g10.7 LOC108267586 coding downstream 292880 20479260 ~ 20485658 (-)
men1 men1,LOC107679288,LOC107731945 coding downstream 323076 20447256 ~ 20455462 (-)
LOC113539812 NA coding upstream 10241 20835761 ~ 20838098 (-)
mad2l1 mad2l1,LOC107730133,LOC107698665,LOC107680902,LOC107732594 coding upstream 69921 20895441 ~ 20899092 (-)
ank2b ank2,LOC103361685,LOC108436150,LOC108267515 coding upstream 186732 21012252 ~ 21160774 (-)
nsmaf nsmaf coding upstream 343370 21168890 ~ 21188778 (-)
unm_hu7910 asph,unm_hu7910,LOC107730121,LOC107698672,LOC108436147 coding upstream 370428 21195948 ~ 21225984 (-)
G68108 NA non-coding downstream 142339 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 142745 20635532 ~ 20635793 (-)
G68106 NA non-coding downstream 146828 20630166 ~ 20631710 (-)
G68080 NA non-coding downstream 207608 20570399 ~ 20570930 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding downstream 211780 20559378 ~ 20566758 (-)
G68466 plag1 non-coding upstream 495298 21320818 ~ 21321146 (-)
G68495 NA non-coding upstream 581591 21407111 ~ 21408207 (-)
G68519 NA non-coding upstream 646112 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 647299 21472819 ~ 21473032 (-)
G68577 NA non-coding upstream 649067 21474587 ~ 21475776 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 812687 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 834704 19919480 ~ 19943834 (-)
G67587 NA other downstream 889812 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 896898 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 1623317 19050150 ~ 19155221 (-)
chchd7 chchd7 other upstream 479172 21304692 ~ 21313897 (-)
G68462 NA other upstream 500526 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 529099 21354619 ~ 21371010 (-)
G68760 NA other upstream 1109006 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1804095 22629615 ~ 22636088 (-)

Expression


Co-expression Network