G68192



Basic Information


Item Value
gene id G68192
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20864878 ~ 20895955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU80850
ttttttttttttaattttcagagatacAGACATAAAAACCTCAGCAAAGGAGAGATctgtttggggggaaaaagacatgaaaactatgtacagaaaacaaacagagagagagagcgaacaTAGAAAATGGTTACATGGAGTTTGTCCTTTTGTAGGCCACCATACTGTTGACCTTGTGGATGGTCGTGGTGAACGAGCGAAGCCGAAcctcttctgattggtcaataaGCTGAGGCCCAGACTCCTCCCACTGCTCAGGGACCTCCAGATCCTTATCTGTGTAGATCAGGAGGTCGAATGCACCTGTCCCAAGTCAGAGAGTGAAAAACATGAGCAGTAGCAGgacattatttattgtttaaaaaaaattgcaaggGAGAAAGTCTCAAgatattacataaatatgtatttatttaggaaGAAAAGACACCCACAGTATGACCCCATGAAATATTTGTAGTTTAGTCACACATTTAAGGATTAGTCAGATCTACAGTTACATGATGC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU80850 True 507 lncRNA 0.40 2 20864878 20895955
Loading

Neighbor


gene id symbol gene type direction distance location
LOC113540687 LOC108267189 coding upstream 17900 20843344 ~ 20846978 (+)
cd248a LOC108268330 coding upstream 125704 20735827 ~ 20739174 (+)
rce1a rce1,rce1a,LOC107683501,LOC107731886,LOC107679240,LOC107710076 coding upstream 172656 20682708 ~ 20692222 (+)
rab1ba rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007 coding upstream 204323 20652575 ~ 20660555 (+)
si:ch73-40a2.1 LOC108267785 coding upstream 215692 20637228 ~ 20649186 (+)
arsj LOC108267195,LOC108436153,LOC107730122,LOC107698664,LOC559800,LOC107559837 coding downstream 15695 20911650 ~ 20926058 (+)
camk2d1 LOC108267517,LOC108436151,LOC107732596 coding downstream 39730 20935685 ~ 21012256 (+)
ggh LOC108267579 coding downstream 293618 21189573 ~ 21194690 (+)
penkb LOC108267267 coding downstream 387999 21283954 ~ 21287359 (+)
sdr16c5b sdr16c5,sdr16c5b,LOC107660835,LOC107570430,LOC107574325,LOC107711413,LOC107730129,LOC108436143 coding downstream 402182 21298137 ~ 21303615 (+)
G68070 NA non-coding upstream 171767 20692263 ~ 20693111 (+)
G68054 NA non-coding upstream 229313 20635348 ~ 20635565 (+)
G67958 LOC108267586 non-coding upstream 383123 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 589203 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 898990 19962599 ~ 19965888 (+)
G68299 NA non-coding downstream 292576 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 309790 21205745 ~ 21209324 (+)
G68313 NA non-coding downstream 338070 21234025 ~ 21234258 (+)
G68435 NA non-coding downstream 420300 21316255 ~ 21316515 (+)
G68523 NA non-coding downstream 591019 21486974 ~ 21487488 (+)
fcer1g LOC100305060 other upstream 710101 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 797658 19990684 ~ 20067220 (+)
G66864 NA other upstream 2006226 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2656314 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2721247 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 124303 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 418263 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 733121 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 856461 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 1753855 22649810 ~ 22652447 (+)

Expression


G68192 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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G68192 Expression in each Bioproject

Bar chart with 3 bars.
G68192 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.

Co-expression Network