G68313


Basic Information

Item Value
gene id G68313
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21234025 ~ 21234258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU80993
ACCCTTCTCAAACTCATACATACAACTCAATTAGGGTCTGAGATAATTTACAGTCTCCCCCTGAAAgtattgttcttttgtttttgccatacactgaagacatttgggtttgagatcaaaagatgaataagaggtgatcagaatttcagctttcatttcatgatatttacatctaggtgTGTTAGCTTGGCATCTTTTGTTTAAATGCACCCAGGGACAGACAGgagtttcttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80993 True 234 lncRNA 0.37 1 21234025 21234258

Neighbor

gene id symbol gene type direction distance location
ggh LOC108267579 coding upstream 39335 21189573 ~ 21194690 (+)
camk2d1 LOC108267517,LOC108436151,LOC107732596 coding upstream 221769 20935685 ~ 21012256 (+)
arsj LOC108267195,LOC108436153,LOC107730122,LOC107698664,LOC559800,LOC107559837 coding upstream 307967 20911650 ~ 20926058 (+)
pde5ab pde5a,pde5ab coding upstream 340494 20852744 ~ 20893531 (+)
LOC113540687 LOC108267189 coding upstream 387047 20843344 ~ 20846978 (+)
penkb LOC108267267 coding downstream 49696 21283954 ~ 21287359 (+)
sdr16c5b sdr16c5,sdr16c5b,LOC107660835,LOC107570430,LOC107574325,LOC107711413,LOC107730129,LOC108436143 coding downstream 63879 21298137 ~ 21303615 (+)
rps20 rps20,rs20 coding downstream 91765 21326023 ~ 21328840 (+)
LOC113540699 NA coding downstream 93088 21327346 ~ 21327420 (+)
zgc:56231 LOC108267807,LOC108436107 coding downstream 96033 21330291 ~ 21337139 (+)
G68304 NA non-coding upstream 24701 21205745 ~ 21209324 (+)
G68299 NA non-coding upstream 44891 21188531 ~ 21189134 (+)
G68192 NA non-coding upstream 338070 20864878 ~ 20895955 (+)
G68070 NA non-coding upstream 540914 20692263 ~ 20693111 (+)
G68054 NA non-coding upstream 598460 20635348 ~ 20635565 (+)
G68435 NA non-coding downstream 81997 21316255 ~ 21316515 (+)
G68523 NA non-coding downstream 252716 21486974 ~ 21487488 (+)
G68621 NA non-coding downstream 498688 21732946 ~ 21749319 (+)
G68687 NA non-coding downstream 680548 21914806 ~ 21917776 (+)
G68947 NA non-coding downstream 1010330 22244588 ~ 22244825 (+)
G68232 LOC108267516 other upstream 200272 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 1079248 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 1166805 19990684 ~ 20067220 (+)
G66864 NA other upstream 2375373 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 3025461 18197312 ~ 18208564 (+)
plag1 plag1,LOC107570635 other downstream 79960 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 394818 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 518158 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 1415552 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 2084246 23318504 ~ 23320343 (+)

Expression


Co-expression Network