G68462


Basic Information

Item Value
gene id G68462
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21326046 ~ 21329250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU81220
CCACATCAAAAAACACTTGGTGTTTCTACATTCTACACATTtgtcttccaaaaaaaaaaaaaaaaaaacctttcacttCAGAGACATCACAACTTTCAATGTTCAGTACACATGCTTCAAGCACTACAAGCTGCAGGTAGTGAACCTACTCATCTAAATTGGTCCTCAAGCTTACTGCAAAACTGAGAAAGTAAACTGGACCAGAAAACTATATTCCTTTACTTACATCAATGTAAAGTGGAAAAATTCCAAGCTTGTGTGCTTGCATCATGTAAAAAGAACCAGGGACTCTGCTCATTTATAAATGGCTTACCAAAGATCAGACAAGTTATGCTTGAACTCTAAATGCTCCATCAGACCACAAAGACAAAACCACACCATGTTCTATccaaattttcttttattgtgcAGACATGAATAGTTCAGTGCTGTTCACACTGGCAACCCAAAGCAGCTTATGCGTCTGCAATGGTAACCTCAACTTCGACACCGGGCTCGATGCTGATGCTGGTGATCTGCTTGACAATCTCAGACGGGCTGTGAAGGTCAATGAGGCGTTTGTGGATCCTCATCTGAAACCTATCCCAGGTCTTGGAACCCTCTCCACAAGGAGTCTTACGGGTGGTGATGCGCAGAGTCTGAAAgtgaaggggggaaaaaagggtgGATTACAGCATAGAACCGACAGTCTAACATTTAGTTAAATCACAGCAAATTCCAAGATTTTGTAATACATGTTTTAGAGGGGAAAAATATCTATTTGGACTGATAATTCTCTCTACAGAACACATTAACcaatttatgtattttgtcAAGAACAGCAAGACTTCTTTCCAAGATAACCTTGACGCAACACAGAGCAGCACATTTCACAGCATGGTCACAAAGCCATATGCTCACCCTGGATTTAAGGCCATTTTTCCACAAAACCAAAGTATACCAATGAGAACATTTCAGATGGTGTCTCTTACAGAGTTTGTCTCTTCCTCATAAAAATCCAGACCTTTCAGGCTTGTTCCAGATCACTTTCAGACTTTCCATGTTCAAATTTGTTGctttttaaagttattaaatggagcatggaaaggaaaaaacatgacatttatggcatttggcagacactcttatccagagtgacttacatttctctcatttatacaacagagcagttgagggttaagggccttgctcaagttcCCAGCAATGGCAGCATGTCAACCCTGGGATCTGAACTCATAACCTGCCAATCCGTAGTCCAAAGTCTTAATCACTGAGCTACTACTGCCCATGAAATTAATTAGGAAGACTGCATAAGTGAAGACAACATAGGGTTTACAACCATTGAGTCAAGTCCATGTTACATGAGTTGAATAGCCATATATTTTCCGCTGGTGACTCGTGTCACTCGTGATCGAAACATTATACAAAATCTTGATCATTTTTCTTAATATGTGTAAATAGgtttatttcaattttacaGTCACAGTGTATGATCAGACAGTCACCTCACTGgtgactttttaaaatgcagattaaaatgcatttctgtctcttttgtcCACCCCTGTGGACAAACCTATTAATAGTTgattgtgctcttttttttttcccactttctcCTCCCCCCATGCTGCATCCCCTGTTCCCCTGCATTATTTACCTTGGTGGGCATGCGCACAGGTCCTTTCACCTTAAGGCTCTTCTCCTTGGCACCACGGACCAGATCAGCACACTTTTTCAAGAGACTTGACGTTACGGCTGGTGAGGGTGATCCGGATGCGGTGGATGGCCACCTCAGGCTCAACAGGAGCTTTGCCAGTGTCTTTGAATGCCTGCAAGTTAGAAACAGCCATCAGGACACATTCTAGGAACAATTTAAATCTTAATTGTATACCATTTCACGTGCAGACTAATGTTCATTTAATTCATAGTTTAGcactttcaccaaaaaaaaaaaaagtaaacaccaATACCACCCCAACAGAAAGAGGGGACATTCAGTACACTTAAGGAGCCTTCACATATGTAGCTATTAGTCTGTTTTAATCAAAACCTGGTGTGATACAGTGAGAACAAGACACACAGCACAGACCAAAACAGCGAGTGAGATGTCCTGTCTCCAATCAAACTTCAGTgcagtaacaaaaataaaaataaataaaaagcaattaaaTCCTGGTACAATCAAAATGTAGGAAAGTGAACCAATCGTGTATTTTGGGTCATGGGCAGCTTTTTGTGCAAGGTGAGCTGCGAGCTACAAAGTGTCAagtgttctggatatttggattaacaaaacaggaaatattCCAGCTACAATAATCAAAATACTTTACAATAGTTATTCACTTTTATAGTTAGTTAGTGCAGTGAGAAACCAATCAGGCCAAATATCAGCTCTGATCCGATCCAGACTCAAAGTGCGTGAAAGAGGCAGTGACTGTAAGCTTTACCTAGAAACACCTTTAAGCATATTCAACATGAACAAATCTCCAAACTCATGGCATACACACCACATACTGAAGTACGTTTTAAAACTAGACGAAAAACAAACTATGCCACCATGTTTTCATAATGCGCTGCTAAATACAATACTCAAAATCTACGGGGATTTCTTTATTCGTGGTAGCGTTGTGCCAGTTCATCACTATCATTAacagagaaagttaataagtgCTCTCTagcaaaacataaacatataggACAATTAATCTTCAATCACAACTAGCAGCTGTTTTCTTAAAAGTCATGCTAACCAGCTAACGCGAGCCGCACGTGCCCGGAGAAACGAGCTAATTTATAAAAACCCCGAAATAATTTCAACATAGTTGCGTAAAAAACATGTTagagaaattaattatttaaaacatttaccaTAGTTGAGTATTCCTGACCGACTTATTCGAGGGAATAAAAAGCGAACAGCGGTGAGCCAGGAAGCACAAACGCACACCGAGTGCTC
>TU81222
CCACATCAAAAAACACTTGGTGTTTCTACATTCTACACATTtgtcttccaaaaaaaaaaaaaaaaaaacctttcacttCAGAGACATCACAACTTTCAATGTTCAGTACACATGCTTATTTGATTTAAAGTTTTCACATTTACTTCAAGCACTACAAGCTGCAGGTAGTGAACCTACTCATCTAAATTGGTCCTCAAGCTTACTGCAAAACTGAGAAAGTAAACTGGACCAGAAAACTATATTCCTTTACTTACATCAATGTAAAGTGGAAAAATTCCAAGCTTGTGTGCTTGCATCATGTAAAAAGAACCAGGGACTCTGCTCATTTATAAATGGCTTACCAAAGATCAGACAAGTTATGCTTGAACTCTAAATGCTCCATCAGACCACAAAGACAAAACCACACCATGTTCTATccaaattttcttttattgtgcAGACATGAATAGTTCAGTGCTGTTCACACTGGCAACCCAAAGCAGCTTATGCGTCTGCAATGGTAACCTCAACTTCGACACCGGGCTCGATGCTGATGCTGGTGATCTGCTTGACAATCTCAGACGGGCTGTGAAGGTCAATGAGGCGTTTGTGGATCCTCATCTGAAACCTATCCCAGGTCTTGGAACCCTCTCCACAAGGAGTCTTACGGGTGGTGATGCGCAGACTTGGTGGGCATGCGCACAGGTCCTTTCACCTTAAGGCTCTTCTCCTTGGCACCACGGACCAGATCAGCACACACTAAAGGGGCAAAAGTTTTATattagtaaaaatatatatacaaggCAAATCCTAAGCTTGTACATAGACATCGGCTCAGAATAGCGTATAATTTGTAATTCATACAGagaatcattttaatatataggTTGTCCTCATTGCCTtgggatggggaaaaaaaggaaaaaaaatctgattacaAACCTTTTTCAAGAGACTTGACGTTACGGCTGGTGAGGGTGATCCGGATGCGGTGGATGGCCACCTCAGGCTCAACAGGAGCTTTGCCAGTGTCTTTGAATGCCTGCAAGTTAGAAACAGCCATCAGGACACATTCTAGGAACAATTTAAATCTTAATTGTATACCATTTCACGTGCAGACTAATGTTCATTTAATTCATAGTTTAGcactttcaccaaaaaaaaaaaaagtaaacaccaATACCACCCCAACAGAAAGAGGGGACATTCAGTACACTTAAGGAGCCTTCACATATGTAGCTATTAGTCTGTTTTAATCAAAACCTGGTGTGATACAGTGAGAACAAGACACACAGCACAGACCAAAACAGCGAGTGAGATGTCCTGTCTCCAATCAAACTTCAGTgcagtaacaaaaataaaaataaataaaaagcaattaaaTCCTGGTACAATCAAAATGTAGGAAAGTGAACCAATCGTGTATTTTGGGTCATGGGCAGCTTTTTGTGCAAGGTGAGCTGCGAGCTACAAAGTGTCAagtgttctggatatttggattaacaaaacaggaaatattCCAGCTACAATAATCAAAATACTTTACAATAGTTATTCACTTTTATAGTTAGTTAGTGCAGTGAGAAACCAATCAGGCCAAATATCAGCTCTGATCCGATCCAGACTCAAAGTGCGTGAAAGAGGCAGTGACTGTAAGCTTTACCTAGAAACACCTTTAAGCATATTCAACATGAACAAATCTCCAAACTCATGGCATACACACCACATACTGAAGTACGTTTTAAAACTAGACGAAAAACAAACTATGCCACCATGTTTTCATAATGCGCTGCTAAATACAATACTCAAAATCTACGGGGATTTCTTTATTCGTGGTAGCGTTGTGCCAGTTCATCACTATCATTAacagagaaagttaataagtgCTCTCTagcaaaacataaacatataggACAATTAATCTTCAATCACAACTAGCAGCTGTTTTCTTAAAAGTCATGCTAACCAGCTAACGCGAGCCGCACGTGCCCGGAGAAACGAGCTAATTTATAAAAACCCCGAAATAATTTCAACATAGTTGCGTAAAAAACATGTTagagaaattaattatttaaaacatttaccaTAGTTGAGTATTCCTGACCGACTTATTCGAGGGAATAAAAAGCGAACAGCGGTGAGCCAGGAAGCACAAACGCACACCGAGTGCTC
>TU81225
CCACATCAAAAAACACTTGGTGTTTCTACATTCTACACATTtgtcttccaaaaaaaaaaaaaaaaaaacctttcacttCAGAGACATCACAACTTTCAATGTTCAGTACACATGCTTATTTGATTTAAAGTTTTCACATTTACTTCAAGCACTACAAGCTGCAGGTAGTGAACCTACTCATCTAAATTGGTCCTCAAGCTTACTGCAAAACTGAGAAAGTAAACTGGACCAGAAAACTATATTCCTTTACTTACATCAATGTAAAGTGGAAAAATTCCAAGCTTGTGTGCTTGCATCATGTAAAAAGAACCAGGGACTCTGCTCATTTATAAATGGCTTACCAAAGATCAGACAAGTTATGCTTGAACTCTAAATGCTCCATCAGACCACAAAGACAAAACCACACCATGTTCTATccaaattttcttttattgtgcAGACATGAATAGTTCAGTGCTGTTCACACTGGCAACCCAAAGCAGCTTATGCGTCTGCAATGGTAACCTCAACTTCGACACCGGGCTCGATGCTGATGCTGGTGATCTGCTTGACAATCTCAGACGGGCTGTGAAGGTCAATGAGGCGTTTGTGGATCCTCATCTGAAACCTATCCCAGGTCTTGGAACCCTCTCCACAAGGAGTCTTACGGGTGGTGATGCGCAGAGTCTGGTGGGCATGCGCACAGGTCCTTTCACCTTAAGGCTCTTCTCCTTGGCACCACGGACCAGATCAGCACACACTTTTCAAGAGACTTGACGTTACGGCTGGTGAGGGTGATCCGGATGCGGTGGATGGCCACCTCAGGCTCAACAGGAGCTTTGCCAGTGTCTTTGAATGCCTAGTTGAGTATTCCTGACCGACTTATTCGAGGGAATAAAAAGCGAACAGCGGTGAGCCAGGAAGCACAAACGCACACCGAGTGCTCTGTTCacggaaaaagagaggcttcgAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81220 True 2962 lncRNA 0.40 3 21326076 21329250
TU81222 False 2151 lncRNA 0.39 2 21326076 21329250
TU81225 False 955 TUCP 0.45 4 21326046 21329250

Neighbor

gene id symbol gene type direction distance location
LOC113540421 LOC108267573 coding downstream 77409 21235253 ~ 21248637 (-)
sdcbp sdcbp,LOC107660837,LOC107730132 coding downstream 92361 21227985 ~ 21233685 (-)
unm_hu7910 asph,unm_hu7910,LOC107730121,LOC107698672,LOC108436147 coding downstream 100062 21195948 ~ 21225984 (-)
nsmaf nsmaf coding downstream 137268 21168890 ~ 21188778 (-)
ank2b ank2,LOC103361685,LOC108436150,LOC108267515 coding downstream 165272 21012252 ~ 21160774 (-)
LOC113540120 LOC108267808 coding upstream 7858 21337108 ~ 21350811 (-)
sox17 LOC108267806 coding upstream 47145 21376395 ~ 21379959 (-)
sox32 LOC108267240,LOC100698545 coding upstream 70305 21399555 ~ 21401268 (-)
mrpl15 mrpl15 coding upstream 84611 21413861 ~ 21417828 (-)
trnaa-ugc NA coding upstream 88918 21418168 ~ 21418239 (-)
G68466 plag1 non-coding downstream 4900 21320818 ~ 21321146 (-)
G68186 NA non-coding downstream 521942 20803417 ~ 20804104 (-)
G68108 NA non-coding downstream 689847 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 690253 20635532 ~ 20635793 (-)
G68106 NA non-coding downstream 694336 20630166 ~ 20631710 (-)
G68495 NA non-coding upstream 77861 21407111 ~ 21408207 (-)
G68519 NA non-coding upstream 142382 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 143569 21472819 ~ 21473032 (-)
G68577 NA non-coding upstream 145337 21474587 ~ 21475776 (-)
G68585 NA non-coding upstream 167682 21496932 ~ 21501433 (-)
chchd7 chchd7 other downstream 12149 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 500526 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1360195 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 1382212 19919480 ~ 19943834 (-)
G67587 NA other downstream 1437320 19888179 ~ 19888726 (-)
LOC113539989 LOC108436138 other upstream 25369 21354619 ~ 21371010 (-)
G68760 NA other upstream 605276 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1300365 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1962798 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 2001766 23331016 ~ 23346573 (-)

Expression


Co-expression Network