G68585


Basic Information

Item Value
gene id G68585
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21496932 ~ 21501433 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU81377
CTCTTGGTGAGGGAAATGCGTTCTGCAGACTCCCTCATGACGGCTCTGCGAGACTTGTGTTCCACACGTTCCATCTCCACCCCACTGGTGAAGAGGTCTCTGCGCGCCAGGTAACCAGCACTCTCTTTAGCCCGAGCCTCTTCAGTGTCTGACAGACCACTCGCAAACTCCTGACTTGGGTGGAGAAGGTGAGGTTGGAGCAGTAGGTGTGGATTGGGATGTCAGTATCATGACAGAAGCATATATACtcttatatacatacataacacaTTTACACGAGAAAACCCTTTTCAAACTTATACATACAAGTGATGCTGGTTTTCCAGGTATGGATTATTGGTAATATTCAAGTAAAAAGGAGGACAGCATTCTCAAATGCATTGTAATCATTATTGTATCTGTGCCTGGAAAACCAGTATCAACAGATACCCTTGATTCCTGAAGTCCAATAAATGCCCATTTGTTTCCCATGAGACCGTGCATTATGACTATGCACGGTCTCATGAGTCCTGGCTCATACCTTCCCCTGAAGATGGGCACCACATAGCCTATAATCTGGTTCTCTTTGTCCACAGCCAGGTAGGTGGACTTGGCTCTCTTTGGCTGAGGACTCACCCCCGTCTCATCCAGAGAGGTAAAGGTGGTACCTCTGATGCTAAAATGCCCACAGCAAAAAATACCATACATGAGTAAATGTCTGGCACGTAAAAACATAGTGAGGgaatataaaagaaatgttggagagagaaatgcagaatTAGGGATTAGATGGGTGAGGGAGGGAAGTAAGTTAATGGTCAGCTAAAATGAATTACTGGGTCAGTGATGAACTGGACCAAGGAGATGTTAAACAAGAGTTTAAGGATGGGACATGATTAAGTTGGTGGATTTCTCTCCTTGGTCTCTTACCCTTTCGTGTTGGTTCTGTGGGCAGAGTAAGTGCTGGAGCTCTGCTGGTATTGGCTGATTGTAGACTCCGCCTCCCGGCTACGGTAGGCACGGTCATAGTGACGATGGTGCCTCTGGTAGAATGGGATCGATCCAGACATCGCCTTCTCCTTATAGCTCAGTGCCTAGCTTCTGCTCTGAAGTTCTCTTACACTGAAGGCTTAAAAGTTTCTACACACAAGTTAAGTAAGTTCGATTATATCTGAATAGGGaggatattattatttttttatttaatcagtaaGGAACCTTATATTATCAAGTGCTTACTTGTCATTCACTATGATACACTGCCTTATGGATTTTAGTCATAACATAGTTGTCTTTCTGAAATGCCTACAAGCGTCACATTAGGTTTAGGTGTTATCAATATTAGATTTATACagctataaaaatgttttaataacagATGAATTTATGACATTCTACAATGTGAAAGATGAAGTTACTCAGATAGGTAGTTGTGTCTTGGGGATAAGTATTGCTTAACTTATCAGTGTTTTAATTCAGAATTTAGCTGGCTACTCGTTTTATCCAGAGAGCCTGTGAATCCACTCCTTTGGTATAAAAGTTCAAAGGAAGCGCATGCAAAAGGACCATGATGCACTGACAAAATCCGAAAGACATTGTGGCAAAATCATGCAtcataataaatttaatataattctCTGAGCATCTGACACAACAaactttttaacctttacatatAACACTGCAGTAACACTTTCCACTACAAAGGTAACACCACACACTGAATTATTCTCACCTTATCCAAAGCTCTGTGGGCTGGAAATCAAGTCAGGTAGCACAGAGGTACAAACAAGGCTCCAGGTCCGAGGGAGGATCAACAAAGCTCAAAATTCACACAAAGTACTGTGCAGTGGAGAAGCAATCTCCAACAACCAAAATAATACTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81377 True 1866 lncRNA 0.42 2 21496932 21501433

Neighbor

gene id symbol gene type direction distance location
myl12.1 LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951 coding downstream 4596 21488187 ~ 21492336 (-)
fastkd3 fastkd3 coding downstream 11119 21480615 ~ 21485813 (-)
LOC113540027 rgs20 coding downstream 66352 21427185 ~ 21430580 (-)
trnaa-ugc NA coding downstream 78693 21418168 ~ 21418239 (-)
mrpl15 mrpl15 coding downstream 79104 21413861 ~ 21417828 (-)
emilin2b LOC108267875 coding upstream 53093 21554526 ~ 21580543 (-)
smchd1 smchd1 coding upstream 80789 21582222 ~ 21623632 (-)
adcyap1a LOC108268182 coding upstream 228762 21730195 ~ 21735758 (-)
tyms tyms coding upstream 247402 21748835 ~ 21757727 (-)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855 coding upstream 276443 21777876 ~ 21785375 (-)
G68577 NA non-coding downstream 21156 21474587 ~ 21475776 (-)
G68520 NA non-coding downstream 23900 21472819 ~ 21473032 (-)
G68519 NA non-coding downstream 25093 21471632 ~ 21471839 (-)
G68495 NA non-coding downstream 88725 21407111 ~ 21408207 (-)
G68466 plag1 non-coding downstream 175786 21320818 ~ 21321146 (-)
G68740 mrc1 non-coding upstream 326840 21828273 ~ 21828833 (-)
G68741 NA non-coding upstream 328643 21830076 ~ 21830642 (-)
G68743 NA non-coding upstream 333789 21835222 ~ 21835426 (-)
G68744 NA non-coding upstream 334337 21835770 ~ 21835995 (-)
LOC117597088 NA non-coding upstream 339048 21840481 ~ 21843581 (-)
LOC113539989 LOC108436138 other downstream 125922 21354619 ~ 21371010 (-)
G68462 NA other downstream 167682 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 183035 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 671412 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1531081 19962582 ~ 19965851 (-)
G68760 NA other upstream 433093 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1128182 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1790615 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1829583 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 1978532 23479965 ~ 23483850 (-)

Expression


Co-expression Network