LOC113540377


Basic Information

Item Value
gene id LOC113540377
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21752416 ~ 21762301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU81415
CCTTCAAACGAAGATTTTTCGGGACCACACTTCAAACGAAGGGGTATGAATTATCTCAGCGTAAACCGGCTACTGCGGCAACATGGCTGCCCGAGCGaacagaaagacccacaaatGTTGCATTTTACCTTGTTGGCTGCCTCCTAACTGGACCTCTTCTCAGTGGAGTACTCTCCAAGAGGAAGCAGTAGGAGGGCTTTGGAAGAGGTAGCAGTTGGCCAATGTCGGGACTGGCTGATCGTGGTTGAGGATGGAGATGCAGCGGTCCAGGAACATGGTGGGGACCTCATTGAAGTGACCCTGGAGGATGTGCTGGTGTTTGCTTCTGGGGCATCTGCCATACCTGCTTTTGGTTTTAGGGAGACAATCAGGTTCCTCCATTATGACCTGAATGGCATCAGGTGGATGTTCCCAGAAGCAAACACCTCCGCCATTACTTTGAAACTACCCGTAGGTCATGACTATGACGGCTTCTGTCATTTAATAACTTCGGGGATCATTCAGTCCCCGATGTTTGGGGTAGCCCAATGATATCATTGATATCTTTGTATTGATTGTTTGTTATGTTCAAAATTACTTCAAAATGTTATTGGTTAATgtctataaac
>TU81416
CCTTCAAACGAAGATTTTTCGGGACCACACTTCAAACGAAGGGGTATGAATTATCTCAGCGTAAACCGGCTACTGCGGCAACATGGCTGCCCGAGCGaacagaaagacccacaaatGTTGCATTTTACCTTGTTGGCTGCCTCCTAACTGGACCTCTTCTCAGTGGAGTACTCTCCAAGAGGAAGCAGTAGGAGGGCTTTGGAAGAGGTAGCAGTTGGCCAATGTCGGGACTGGCTGATCGTGGTTGAGGATGGAGATGCAGCGGTCCAGGAACATGGTGGGGACCTCATTGAAGTGACCCTGGAGGATGTGCTGGTGTTTGCTTCTGGGGCATCTGCCATACCTGCTTTTGGTTTTAGGGAGACAATCAGGTTCCTCCATTATGACCTGAATGGCATCAGGTGGATGTTCCCAGAAGCAAACACCTCCGCCATTACTTTGAAACTACCCGTAGGTCATGACTATGACGGCTTCTGTCATTTAATAACTTCGGGGATCATTCAGTCCCCGATGTTTGGGGTAGCCCAATGATATCATTGATATCTTTGTATTGAT
>XM_034303777.1
GTAGGGGTGAGGGGTAGGGCCAGATAGCCCTTCAAACGAAGATTTTTCGGGACCACACTTCAAACGAAGGGGTATGAATTATCTCAGCGTAAACCGGCTACTGCGGCAACATGGCTGCCCGAGCGaacagaaagacccacaaatTGGAGTACTCTCCAAGAGGAAGCAGTAGGAGGGCTTTGGAAGAGGTAGCAGTTGGCCAATGTCGGGACTGGCTGATCGTGGTTGAGGATGGAGATGCAGCGGTCCAGGAACATGGTGGGGACCTCATTGAAGTGACCCTGGAGGATGTGCTGGTGTTTGCTTCTGGGGCATCTGCCATACCTGCTTTTGGTTTTAGGGAGACAATCAGGTTCCTCCATTATGACCTGAATGGCATCAGGTGGATGTTCCCAGAAGCAAACACCTCCGCCATTACTTTGAAACTACCCGTAGGTCATGACTATGACGGCTTCTGTCATTTAATAACTTCGGGGATCATTCAGTCCCCGATGTTTGGGGTAGCCCAATGATATCATTGATATCTTTGTATTGATTGTTTGTTATGTTCAAAATTACTTCAAAATGTTATTGGTTAATgtctataaacatttaaatgatgaCCTAAA
>XR_003404030.2
GTAGGGGTGAGGGGTAGGGCCAGATAGCCCTTCAAACGAAGATTTTTCGGGACCACACTTCAAACGAAGGGGTATGAATTATCTCAGCGTAAACCGGCTACTGCGGCAACATGGCTGCCCGAGCGaacagaaagacccacaaatGTTGCATTTTACCTTGTTGGCTGCCTCCTAACTGGACCTCTTCTCAGTGGAGTACTCTCCAAGAGGAAGCAGTAGGAGGGCTTTGGAAGAGGTAGCAGTTGGCCAATGTCGGGACTGGCTGATCGTGGTTGAGGATGGAGATGCAGCGGTCCAGGAACATGGTGGGGACCTCATTGAAGTGACCCTGGAGGATGTGCTGGTGTTTGCTTCTGGGGCATCTGCCATACCTGCTTTTGGTTTTAGGGAGACAATCAGGTTCCTCCATTATGACCTGAATGGCATCAGGTGGATGTTCCCAGAAGCAAACACCTCCGCCATTACTTTGAAACTACCCGTAGGTCATGACTATGACGGCTTCTGTCATTTAATAACTTCGGGGATCATTCAGTCCCCGATGTTTGGGGTAGCCCAATGATATCATTGATATCTTTGTATTGATTGTTTGTTATGTTCAAAATTACTTCAAAATGTTATTGGTTAATgtctataaacatttaaatgatgaCCTAAA
>XR_004578015.1
cTAAAACATATACTGGTTCAACTAGTTATCATGCTAACTAGAGTTACCATTAGCAAAGACAGTCATGACGTTGCTTTTCAACTATTTGAAAGGTTGCATTTTACCTTGTTGGCTGCCTCCTAACTGGACCTCTTCTCAGTGGAGTACTCTCCAAGAGGAAGCAGTAGGAGGGCTTTGGAAGAGGTAGCAGTTGGCCAATGTCGGGACTGGCTGATCGTGGTTGAGGATGGAGATGCAGCGGTCCAGGAACATGGTGGGGACCTCATTGAAGTGACCCTGGAGGATGTGCTGGTGTTTGCTTCTGGGGCATCTGCCATACCTGCTTTTGGTTTTAGGGAGACAATCAGGTTCCTCCATTATGACCTGAATGGCATCAGGTGGATGTTCCCAGAAGCAAACACCTCCGCCATTACTTTGAAACTACCCGTAGGTCATGACTATGACGGCTTCTGTCATTTAATAACTTCGGGGATCATTCAGTCCCCGATGTTTGGGGTAGCCCAATGATATCATTGATATCTTTGTATTGATTGTTTGTTATGTTCAAAATTACTTCAAAATGTTATTGGTTAATgtctataaacatttaaatgatgaCCTAAA
>XR_004578016.1
GATGCAGCCGTACAGCAGAGTCTACAGTGTTAAGtgaaaaactaaatatttgCTCATTGGAAGATTGTTGCATTTTACCTTGTTGGCTGCCTCCTAACTGGACCTCTTCTCAGTGGAGTACTCTCCAAGAGGAAGCAGTAGGAGGGCTTTGGAAGAGGTAGCAGTTGGCCAATGTCGGGACTGGCTGATCGTGGTTGAGGATGGAGATGCAGCGGTCCAGGAACATGGTGGGGACCTCATTGAAGTGACCCTGGAGGATGTGCTGGTGTTTGCTTCTGGGGCATCTGCCATACCTGCTTTTGGTTTTAGGGAGACAATCAGGTTCCTCCATTATGACCTGAATGGCATCAGGTGGATGTTCCCAGAAGCAAACACCTCCGCCATTACTTTGAAACTACCCGTAGGTCATGACTATGACGGCTTCTGTCATTTAATAACTTCGGGGATCATTCAGTCCCCGATGTTTGGGGTAGCCCAATGATATCATTGATATCTTTGTATTGATTGTTTGTTATGTTCAAAATTACTTCAAAATGTTATTGGTTAATgtctataaacatttaaatgatgaCCTAAA
>XR_004578017.1
CGTTTCGCGCGTTCACGTGAAGGGGTTGCATTTTACCTTGTTGGCTGCCTCCTAACTGGACCTCTTCTCAGTGGAGTACTCTCCAAGAGGAAGCAGTAGGAGGGCTTTGGAAGAGGTAGCAGTTGGCCAATGTCGGGACTGGCTGATCGTGGTTGAGGATGGAGATGCAGCGGTCCAGGAACATGGTGGGGACCTCATTGAAGTGACCCTGGAGGATGTGCTGGTGTTTGCTTCTGGGGCATCTGCCATACCTGCTTTTGGTTTTAGGGAGACAATCAGGTTCCTCCATTATGACCTGAATGGCATCAGGTGGATGTTCCCAGAAGCAAACACCTCCGCCATTACTTTGAAACTACCCGTAGGTCATGACTATGACGGCTTCTGTCATTTAATAACTTCGGGGATCATTCAGTCCCCGATGTTTGGGGTAGCCCAATGATATCATTGATATCTTTGTATTGATTGTTTGTTATGTTCAAAATTACTTCAAAATGTTATTGGTTAATgtctataaacatttaaatgatgaCCTAAA
>XR_004578018.1
aaagcgttttcgggggccaagcatcCAGACTCGGTTGCATTTTACCTTGTTGGCTGCCTCCTAACTGGACCTCTTCTCAGTGGAGTACTCTCCAAGAGGAAGCAGTAGGAGGGCTTTGGAAGAGGTAGCAGTTGGCCAATGTCGGGACTGGCTGATCGTGGTTGAGGATGGAGATGCAGCGGTCCAGGAACATGGTGGGGACCTCATTGAAGTGACCCTGGAGGATGTGCTGGTGTTTGCTTCTGGGGCATCTGCCATACCTGCTTTTGGTTTTAGGGAGACAATCAGGTTCCTCCATTATGACCTGAATGGCATCAGGTGGATGTTCCCAGAAGCAAACACCTCCGCCATTACTTTGAAACTACCCGTAGGTCATGACTATGACGGCTTCTGTCATTTAATAACTTCGGGGATCATTCAGTCCCCGATGTTTGGGGTAGCCCAATGATATCATTGATATCTTTGTATTGATTGTTTGTTATGTTCAAAATTACTTCAAAATGTTATTGGTTAATgtctataaacatttaaatgatgaCCTAAA

Function

GO:

id name namespace
GO:0032259 methylation biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU81415 False 608 lncRNA 0.47 3 21754108 21762282
TU81416 False 555 lncRNA 0.49 3 21754108 21762229
XM_034303777.1 False 608 mRNA 0.47 3 21754080 21762301
XR_003404030.2 True 655 misc_RNA 0.47 3 21754080 21762301
XR_004578015.1 False 603 misc_RNA 0.44 3 21752416 21762301
XR_004578016.1 False 577 misc_RNA 0.45 3 21756781 21762301
XR_004578017.1 False 535 misc_RNA 0.46 3 21754018 21762301
XR_004578018.1 False 544 misc_RNA 0.46 3 21757848 21762301

Neighbor

gene id symbol gene type direction distance location
enosf1 enosf1 coding upstream 3703 21741189 ~ 21748713 (+)
LOC113540483 lpin2,LOC106916092,LOC103149806,LOC106945104,LOC108230461 coding upstream 200606 21536003 ~ 21551810 (+)
myom1b myom1,LOC108267511,LOC106590144 coding upstream 216783 21496953 ~ 21535633 (+)
chmp5b chmp5,chmp5b,LOC108436133,LOC102227507 coding upstream 271936 21475271 ~ 21480480 (+)
LOC113540433 oprk1,LOC108267332,LOC103039256,LOC108436134,LOC105007147,LOC107664042,LOC107732559,LOC107586336,LOC107558938 coding upstream 286593 21459111 ~ 21465823 (+)
LOC113540212 colec12 coding downstream 4751 21767052 ~ 21776821 (+)
LOC113539992 tmem236 coding downstream 24889 21787190 ~ 21793201 (+)
mrc1a mrc1 coding downstream 45423 21807724 ~ 21828839 (+)
LOC113540130 slc39a12 coding downstream 66723 21829024 ~ 21843884 (+)
cacnb2a cacnb2,cacb2 coding downstream 87340 21849641 ~ 21914232 (+)
G68621 NA non-coding upstream 3097 21732946 ~ 21749319 (+)
G68523 NA non-coding upstream 264928 21486974 ~ 21487488 (+)
G68435 NA non-coding upstream 435901 21316255 ~ 21316515 (+)
G68313 NA non-coding upstream 518158 21234025 ~ 21234258 (+)
G68304 NA non-coding upstream 543092 21205745 ~ 21209324 (+)
G68687 NA non-coding downstream 152505 21914806 ~ 21917776 (+)
G68947 NA non-coding downstream 482287 22244588 ~ 22244825 (+)
G68955 NA non-coding downstream 620793 22383094 ~ 22387745 (+)
G68954 scrib non-coding downstream 630538 22392839 ~ 22397101 (+)
G68999 NA non-coding downstream 765027 22527328 ~ 22527556 (+)
mettl4 mettl4 other upstream 112259 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 428449 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 718663 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 1597639 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 1685196 19990684 ~ 20067220 (+)
LOC113540463 NA other downstream 887509 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 1556203 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 2265805 24028106 ~ 24106223 (+)
G69971 NA other downstream 2346494 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 3096725 24859026 ~ 24871263 (+)

Expression


Co-expression Network