LOC113540463


Basic Information

Item Value
gene id LOC113540463
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22649810 ~ 22652447 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82061
AGTAATAGGCAACGTCATCATTTCGCCATAGCTCTACGTGTATCTTTAGGAGCTGCGTGTATCAGAGCCAGTGCTAGCAAGTGTAGTTCATTCGGCTTTGGACAGCTTCACGAAGACCGTTGTGATGGATCAGGTAATGCAGTTCGTGGAGCCAGGACGGCAGTTTGTGAAGGACTCCATCAGACTGGTGAAGAGATGCACAAAACCTGACAGGAAAGAGTTTCAGAAGATTGCCATGGCCACAGCGATTGGTTTTGCAATCATGGGCTTCATTGGGTTCTTCGTCAAGCTCATCCACATCCCCATTAACAACATCATTGTTGGTGGTTAAACTGTGCACTGGAGACTGAACTGCTGGACTTGTGCCTTGcataggttttatttttttcttgtatgtatgtaaattaaagtatttacaaattcttgttttttctttgcaagAATGtgccacacactctctacaAACTGTATTTGCGTGGCTTGTATTGtataaaaaactttttacatATACTTATAGTCTGTTTATTTGCCTGTCCTACCATTAATACAACAAATGATCACATCCCAGTAGCTTGTTTGAATATGAGAATAAATAcagaa
>XM_026936971.2
TaactaaagtaaaatatattaaatgtacaCGTATTAGTTCATAGTAATCTGTGGTCACGTGGAAAAATCTACAGACTTCCGGTTGTGGGCGACGTTGTATGCATTGCGCATGCGCGAGTAATAGGCAACGTCATCATTTCGCCATAGCTCTACGTGTATCTTTAGGAGCTGCGTGTATCAGAGCCAGTGCTAGCAAGTGTAGTTCATTCGGCTTTGGACAGCTTCACGAAGTCAGACCGTTGTGATGGATCAGGTAATGCAGTTCGTGGAGCCAGGACGGCAGTTTGTGAAGGACTCCATCAGACTGGTGAAGAGATGCACAAAACCTGACAGGAAAGAGTTTCAGAAGATTGCCATGGCCACAGCGATTGGTTTTGCAATCATGGGCTTCATTGGGTTCTTCGTCAAGCTCATCCACATCCCCATTAACAACATCATTGTTGGTGGTTAAACTGTGCACTGGAGACTGAACTGCTGGACTTGTGCCTTGcataggttttatttttttcttgtatgtatgtaaattaaagtatttacaaattcttgttttttctttgcaagAATGtgccacacactctctacaAACTGTATTTGCGTGGCTTGTATTGtataaaaaactttttacatATA
>XM_034303428.1
TGGTATCAATGGTGATATaactaaagtaaaatatattaaatgtacaCGTATTAGTTCATAGTAATCTGTGGTCACGTGGAAAAATCTACAGACTTCCGGTTGTGGGCGACGTTGTATGCATTGCGCATGCGCGAGTAATAGGCAACGTCATCATTTCGCCATAGCTCTACGTGTATCTTTAGGAGCTGCGTGTATCAGAGCCAGTGCTAGCAAGTGTAGTTCATTCGGCTTTGGACAGCTTCACGAAGACCGTTGTGATGGATCAGGTAATGCAGTTCGTGGAGCCAGGACGGCAGTTTGTGAAGGACTCCATCAGACTGGTGAAGAGATGCACAAAACCTGACAGGAAAGAGTTTCAGAAGATTGCCATGGCCACAGCGATTGGTTTTGCAATCATGGGCTTCATTGGGTTCTTCGTCAAGCTCATCCACATCCCCATTAACAACATCATTGTTGGTGGTTAAACTGTGCACTGGAGACTGAACTGCTGGACTTGTGCCTTGcataggttttatttttttcttgtatgtatgtaaattaaagtatttacaaattcttgttttttctttgcaagAATGtgccacacactctctacaAACTGTATTTGCGTGGCTTGTATTGtataaaaaactttttacatATA

Function

GO:

id name namespace
GO:0071806 protein transmembrane transport biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006412 translation biological_process
GO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG:

id description
K07342 SEC61G, SSS1, secE; protein transport protein SEC61 subunit gamma and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TU82061 False 600 lncRNA 0.41 4 22649943 22652447
XM_026936971.2 False 630 mRNA 0.42 4 22649827 22652357
XM_034303428.1 True 643 mRNA 0.41 4 22649810 22652357

Neighbor

gene id symbol gene type direction distance location
si:dkey-94e7.2 si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344 coding upstream 3372 22641742 ~ 22646438 (+)
ankrd33bb LOC108268146 coding upstream 105223 22538818 ~ 22544587 (+)
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding upstream 124044 22504804 ~ 22525766 (+)
atpsckmt fam173b coding upstream 147949 22497558 ~ 22501861 (+)
LOC113539999 LOC108267232,LOC108440662 coding upstream 154700 22484285 ~ 22495110 (+)
tcea1 tcea1 coding downstream 18042 22670489 ~ 22677200 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 50532 22702979 ~ 22737767 (+)
oprk1 oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938 coding downstream 97418 22749865 ~ 22757329 (+)
chmp5a chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917 coding downstream 113816 22766263 ~ 22769071 (+)
bag1 bag1,LOC107746903,LOC106569734 coding downstream 118526 22770973 ~ 22774754 (+)
G68999 NA non-coding upstream 122254 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 252709 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 262065 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 404985 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 732034 21914806 ~ 21917776 (+)
LOC113540593 NA non-coding downstream 274363 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 349551 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 632107 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 638963 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 678586 23331033 ~ 23331529 (+)
LOC113540377 NA other upstream 887509 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1009653 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1325843 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1616057 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2495033 20147795 ~ 20154777 (+)
G69509 LOC108267411 other downstream 666057 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1375659 24028106 ~ 24106223 (+)
G69971 NA other downstream 1456348 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2206579 24859026 ~ 24871263 (+)
tnr tnr other downstream 3055380 25707827 ~ 25881110 (+)

Expression


Co-expression Network