G69294


Basic Information

Item Value
gene id G69294
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23001998 ~ 23004102 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82192
GGCAGGATGCCATGGCGATTCTGCAGCGCTGTGAGAATGGCAGCTTAATTTACAGAGTTACACGCGAAGCCTTGCATTCACGGCCTGTCTTTCTATTTACAAACACTGCATTCTCATAGCAGCTTCTCCATCGAAGCTGATAGTCTGATTCAATgcaaatgttatttataaagGGAGAACTACTGTAAAAGGAAGGATTCAGTTTGCAGTGcagctttttttcctccacagttTTCAGATGCCGAGTACAGCTGTAAGACCAGAGTGACATACAATATAAATTGGCAGAAAACTGCTTCTGTAAATTCACTTGCAAAGCTTCTTGGATTAAAAACTGTCCATGGAGCACATGTGGCTGGCAGCAGAATGAAAGGGATTAAGCTTGTGGCTTAGTTTATTACATAATAGCATGATGTTGGTGGCCTGTGTTGCGTTGGCTAGCTGCAGAGTCGAATATCTGATCTAATACAGTTGGTTCTGGCTTCATTTTTTCATGGAGTAAAAGCAGCATATGCAACTGCACACTATTCCTGCATTCGATTTACCTCAGAATTAGGAGCTCAACATTCTGCCATTTTCAACCACCGTgcgttcaagctacaaagtgggactccttcatgttcgtcttttgttagctacctgtgatgtatattttcctccgcAGAGCagcgaactgtatagtcagCGTAACATATTTAACAAGGAAATATGTCTATGTTGATTGATCCAAAGTAAATACTCGTATACAGCATGACTGAttacatcacttgctgaactctgggATAAGGAGACCATCCCAAGTAGGAATTAAGGAttatttttaatccataAAGAATAGTTTAACTCGTGCGATGAGGAGGTTGATTGCTATAGTTGTTAACTGTAGCTTTGGAGTCAGAAAATCAGAATAGAGGATATTTTTGTGCAATTTAACTGTACACAGCCACAATTCAAGTAGTATGTCACATCATGTACTGGGGGAATGCCTGAAAAACAGCCAAGCTTTTATTATACATAAATCTCCTTATATTCACTCATTagtaagaatatttttttgCTTCCAAATTTTGACCTGATCGGTAAGGAGGTTCAAAATGCTTGCCGTCACTTAGCTCTTTTCTGAGAAGTTGAACTTTTTTCAACTTTGGCAGTGCtctgctgtgaagaaaaaaacatgcaggcgGAAGTGCTTTTTAAAGCACTGCATCCCATAGGATTACATCTGAAACGTGCCCTGCAGTTGAGAAAAACAAGGCCAAGTGTGAATGCAACCTAAATCGTTATCTGATTCCAAGTTCTTGTCTATGCTTGTGCACACGCTCTTGCTGGGTGAACTGAATGAGACGTTGCCCGTGGCTTCTGAACCTTAATCTTTCTTGGTTTGTGTCATATTTCTGGCACAGGGAAAGGTCTTTCTTGTGGTATccgttgtgtatgtgtgtacactcGCATACACAGTATGCTTTAAGCGCTGTCTCAGCTGTGCACTGTAATAGAGATCCCAACTGGGCTCTGTTCATTCCTGCAGTGTTAAGCAGCGTTACTCAGTTTGCACTGGTATTTCTAACAAAACTTCTTTGTCTATTGAACAGATCATCACCACTGaacagaaaatcatgcagatgtcTGACTTGATTCTTTCTCATTTTGCTAGCCAAGAAGGCTACATTATAAGAGGACAGGTTAAGTCATTACTGTGTAACATGGTTTATGACGTTCCCTGAATGGGAGTGTCGGTATTTACTGGCATCACTGATAAGACACGTCTGGTTTGAATGGTTTCTCGTGGCTTATATGTGCATTCTTTTGTAGCTCTGGTGCAAGTGCCTGTTGTCTCCATTGCTGCGTGCTTTTGAACTCCGAATACAGTTGCGTGAGGTTTATTAATAACATCGTTGTATAAGGCAGTTCAGTCACTAATGattctcaaattcaaattcaaattttatttgtcacatgcataaccatatatatgacttgcagtgaaatgctttttttttttttttttttacaactgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82192 True 2019 lncRNA 0.40 2 23001998 23004102

Neighbor

gene id symbol gene type direction distance location
lpin2 lpin2,lipin2,LOC108413408,LOC107686047 coding upstream 164159 22808862 ~ 22837839 (+)
myom1a LOC108268132,LOC108440660,LOC107664077,LOC107732591,LOC107556630 coding upstream 196064 22776639 ~ 22805934 (+)
bag1 bag1,LOC107746903,LOC106569734 coding upstream 227244 22770973 ~ 22774754 (+)
chmp5a chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917 coding upstream 232927 22766263 ~ 22769071 (+)
oprk1 oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938 coding upstream 244669 22749865 ~ 22757329 (+)
LOC113540574 stam,LOC108267818 coding downstream 50398 23054500 ~ 23103788 (+)
si:dkey-32m20.1 LOC108267269 coding downstream 101521 23105623 ~ 23109703 (+)
cacnb2b cacnb2b,LOC108267179,LOC107713974,LOC107686054 coding downstream 120078 23124180 ~ 23144086 (+)
si:ch211-106h4.4 NA coding downstream 177768 23181870 ~ 23214191 (+)
si:ch211-106h4.6 LOC108267631 coding downstream 210973 23215075 ~ 23230453 (+)
LOC113540593 NA non-coding upstream 63257 22926810 ~ 22938741 (+)
G68999 NA non-coding upstream 474442 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 604897 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 614253 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 757173 22244588 ~ 22244825 (+)
G69443 NA non-coding downstream 280452 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 287308 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 326931 23331033 ~ 23331529 (+)
G69522 NA non-coding downstream 363559 23367661 ~ 23368677 (+)
G69570 NA non-coding downstream 443361 23447463 ~ 23457206 (+)
LOC113540463 NA other upstream 349551 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1239697 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1361841 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1678031 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1968245 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 314402 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1024004 24028106 ~ 24106223 (+)
G69971 NA other downstream 1104693 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1854924 24859026 ~ 24871263 (+)
tnr tnr other downstream 2703725 25707827 ~ 25881110 (+)

Expression


Co-expression Network