G69509 (LOC108267411)


Basic Information

Item Value
gene id G69509
gene name LOC108267411
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23318504 ~ 23320343 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82445
ACTGAAATCATTTTCATCAGCAGCCACACTATTTTGATTTAATAACTTTATTCATGCAATAAGTGATATTAAAAAACTGAGCATCTTCAAAGGGCTGTAATGAAATATCATTCACAATTCAAACATGGATGGTGTATTGTAAATTTGAAGGAATAAATTGAATTCCAGTTTTGGCAAGCCAGTCTTGCACTTCATTCTGGAGAGCATGGACTTAGAATTACAAtgtacaaaacagaaaaataatagtTTGACTAGAAAATCAAAGTGCATTGCCCATATTCAAATAAACCCCTCAGAGTTTGCAATACACATAAATTCAGAAAGTACTGATTTGAAATTATCCCTATAAAGCACAGGCCTTCTTCTCCTGTTCTGAACTGTTCTGAAGTGTGGGCTCTGGCTTCATTACCAGGAGGTCTCTGTTGACTTTAGCATGTTTGTGAGTTCCTTTTGAAACACTACACTTGGGTTGAGTGTTAAAGCTTTTCAGATAATGGCATGTCCTCTTATTTCTTATAGTGACCCAGGTATCCCCTCAGGAAATCCTCAAATCGTGAGACCTGGTACTGTGGTGCTACATTGGCGTTGCTGGTGTCATCACCACGTTCCAGCTCATCCTTGGGATCCTCAGCTGCCTTTTTGTTGTCTGTGGGTCCTGCACGGCGCAGACGGCAGTTGTAGTCAGTTTCAGGATCACAGTCAGGATGGGGTAAGATGATGCCACCCTGCATGTTCTCGAATGCCTCAATGGAAGCCGGAGGGGAAAAATTGCTACAGCTGGGGTCATATGGATGGCATTCTGTGGCACTGGACTTTGCTTGTTGGCTAATcggtaatggtttcattaaggCAGCTAGGTGGAGGGGAGTCAGCTCACCTTGTGGCACATACTGCAGCACAGGAGCCTTAAGTGTGACCAGCCTGTTAGCAGTGAGTGGGTTGCACCCCGTTTCAAACAGCGGGTTGCAGTGCTGCTTGAGGACCTACAGAAAAGATACAGTAGGGATCAAGATATGGGTTACACACATTCACTGGAGCTTGCTTCATGGCAGCAGGCAAAACAATCTTAGCCGTGGGCTTGCTGGTGTACTCTGGAATGCAGTCAGGGTCATCTGATTTAGCACAGGCCTTGTAGACCTCACTCAGGTGGGTGAGGTAATGTTTGTAGGAATTGTCCCCATCAACCCGGTGCTTGTTCTGCAAGTAGATCAAGTAGAGCTGGTCCAAACTCTCAATCTGTAGATGTGAAAACAGAGGTGAATGGCTCTTAAGGGTGAAAGTGATTTGTGCCTGGCAACAATCTTTCAACAACAGCACTATTAGTCGAGTTATGTATCGTATGAGATTACTCACTCCCTCCTGGTTGTGGGTGCTCATGTAGTACTTGTACCAGGCCCAGAATTCAGGCAAGCGTTTGTAGTAAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108267411

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82445 True 1424 TUCP 0.44 2 23318504 23320343

Neighbor

gene id symbol gene type direction distance location
ackr4a LOC108267630 coding upstream 41703 23273523 ~ 23276801 (+)
si:ch211-106h4.6 LOC108267631 coding upstream 88051 23215075 ~ 23230453 (+)
si:ch211-106h4.4 NA coding upstream 104313 23181870 ~ 23214191 (+)
cacnb2b cacnb2b,LOC108267179,LOC107713974,LOC107686054 coding upstream 174418 23124180 ~ 23144086 (+)
si:dkey-32m20.1 LOC108267269 coding upstream 208801 23105623 ~ 23109703 (+)
rnf182 rnf182 coding downstream 24715 23345058 ~ 23349627 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 33626 23353969 ~ 23376185 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding downstream 66666 23387009 ~ 23391001 (+)
stard3nl stard3nl,LOC107713985 coding downstream 72315 23392658 ~ 23401730 (+)
otulinb LOC108268091 coding downstream 274618 23594961 ~ 23608201 (+)
G69449 NA non-coding upstream 26506 23291410 ~ 23291998 (+)
G69443 NA non-coding upstream 33578 23284554 ~ 23284926 (+)
G69294 NA non-coding upstream 314402 23001998 ~ 23004102 (+)
LOC113540593 NA non-coding upstream 379763 22926810 ~ 22938741 (+)
G68999 NA non-coding upstream 790948 22527328 ~ 22527556 (+)
G69514 NA non-coding downstream 10690 23331033 ~ 23331529 (+)
G69522 NA non-coding downstream 47318 23367661 ~ 23368677 (+)
G69570 NA non-coding downstream 127120 23447463 ~ 23457206 (+)
G69641 NA non-coding downstream 290610 23610953 ~ 23611157 (+)
LOC117597085 NA non-coding downstream 334579 23654922 ~ 23767863 (+)
LOC113540463 NA other upstream 666057 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1556203 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1678347 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1994537 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 2284751 21020258 ~ 21033753 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 707763 24028106 ~ 24106223 (+)
G69971 NA other downstream 788452 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1538683 24859026 ~ 24871263 (+)
tnr tnr other downstream 2387484 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 2576674 25897017 ~ 25902006 (+)

Expression


Co-expression Network