retreg1 (fam134b)


Basic Information

Item Value
gene id retreg1
gene name fam134b
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23331016 ~ 23346573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82468
atatatatatatggtccAGTTTTATTAGCAGATTTGGTTGCATTTTGTTCCAAAGTGAAATGAAGatggattaaagaaaaaaaagatggctgACATTTGGCCCCACTTCACTCCTCTTTATATCCACTGCACTGGGGGTTATATAGGTTTAAAATCTGTCATTATTCTGTGAGGTACTTTATATCTATCTAAAATCACTTTCTAAATGTCCTATGAATTGTACTATGAAATAATGTAAACAGCTCTTCTAGTAACACAATGACTCAATATGAACTTTTCTAATGTGATTAATATGAACATTAtacaaaaatgatttgtttcagtgtcagtgtgattCCAAATGCATCTGAATGTACTAtttattccttcctttcttcttctctcctgaTAGATTACTTCACATACATATGATTGCCTTATATGCCTGTGTGAATTGTGTGTCagaatgaaagaacaaaaaaatatagttgtatgtaaattatcttaaaaatgtgattaaaatatgAAGATTTAAAGTCAG
>XM_026936871.2
cgcgcgctcgcGGGGAGGAGCGCGAGCTCAGTCGGGGAGCGCGATGGCGGAGAGAACGGAGCGGGAGGCTACAGGAGCCCGGCGGCCCTCATCAATCAGCCCTGCGCCGACGTGCTGCCGAAGCCCGCTGATGACCTGGAAGGCGCCGGTGAAGACTTGCGCCACCTTTGCAGCGACGAACGTCGTGTTCTGGTTTGTGTCCTTTAGTCCATTCCGAGTGGTTTGTCTTCTCTGCTTGTGTCTGCTTCTATTGCTGCTGGTACAGTTGCTGAGGGACATGGCACTTTCCAGGTCAAGAGGATCCAGTTTATGGCGAAGTATGACAGGCAGCTGGGAGCTGGTGGACTCAGGTCAGGAGAGCGGGTCTGGAGCAGAAGCTCAGCTTACAGACTGCTGGGTGAGCATCAAGCTGTTCCTTGAGGAGACGTCTTCTTTCAAACAGCAGAATCCGGGGAAGTTTTGTCTTCTGGTATGCAGCTTGTGTTTTTTCCTGGCCGTACTGGGCAATTACATTCCAGGAGTTGTTATTTCATATATTATAGTGCTAGGCATATTCCTGTGGCCTGTTGTGTCGTCACATGAGTTTGGGATGTGGCTGGAACCAGTTCTGCAGAAACTGAACTTTGGAGTGGGGCACTTCCTGCAAAAGATAAAAGAGAATCATGAAAAGAGATTACTCCAAGCAGAGGCTGAGAAAGAAAGCATTGAAGCTGATCTGTCCTCAATGTTCCCTAAGCTGGACTCCACGGTGTGTAGGGAGCTGTCTGTATCAGACACAGAAGTCTCTGAAGTAACATGGACTGATAACGGCACCTTTAACTTATCAGAAGGACACACACCTCAGACAGAGAACTCAGAGGatttagatcgtCGCAGCGAGGAGGAGGTGTTCTCTGGTGGCCTCACTGACTTTCCCTCCTTGGATAATGGTGCAGGAACGAATGGGGATGATGAGGACCTGAGCATTGGCCTGCCCACCACGTCCATCCCCCAGCACAGAGTGGCTCGAGGGACAGGTGTGGGGGACGAGGCTGCGGTGACTCAAGCTTTGGGACTTCTACAGAGGACGGCCGAGAACGCCATTACAGCTGCAGTCACTGCTGCCATACAAGAGCGGCTGGAGTCGGCGATTGCTGACAACACAGACAGCGAGGCTGAGGACTTTGAGCTGCTGGACCAGTCTGAGCTTGAACATATGGAGGGTGACCTGGGCCTGGAGAGTGAGAATGGTGAGCCTCAGGCCAAAGACGCCAAAAATGCTGGTTTTTTCTCCAAACTGCTCGGGCACCAGTAATGACATCATCTTTGCAATGAGGTAGAAGCGTGAGTAGAAAACAGTCCTAGAGACTGGGGAAGGTCCAGATTAATGACGGtattccattgttttttttaatgttaaaatgtttcaattaaATCACCTTGCAGTAAATTCCAAATCCACAGAGGAACGATGCTTCTTGTACAATGATGTGTGAGGGAAGGAATGAGGGTTTGAtactttcaggtttttttttttatcttcttcaTTTACCCACCTTAAAATGGTTTCAGACCTGGTCcccattttaaaacaaattctataaaactttttttcatttgtttgtgttgatttgtgatctaaacatttgtttgtgcttttttgGTTTTTGAGAAATTATAGTGGCTATATTTCACTGTAAAACTATGGCCATGAGTGACGTTGCAGACACCAACTCAACTCAAACCAAACCAATATCTAAACAAATTAGTGTCAAATGTTTGTACTGTACAACAGTttctgcttgattttttttttttgatgtattACATTCAATTCACAGTGACATCACTCTCAGACTTACATTCATACTGTAATATCTCAAAAACCAAAacaccaaaataaataatttttcatgaCATAAAACCAGTTCAAAcgttttaatttcttttcatatGGGGTGCCAGCTTAATAAAGGGTAGTTTCAGTTAGAGGGAGATTCtcattatgctgctgccaaaTGAACTTGTTATAAAAGTTAGTGAGTGATGTGCAGATCATCTCCTCTCAGCACCTTCTTTCCTGATAATATACACGGCTCAAAGGCCAAAGAGACAAGGCCTCTCACAAAAAGACAATCAGTAGGGTTTCCACATGAATAACTACATCGTAACCAAAAAATTGTATTCATCTATAACTCAAGCAGATAATCATGAAATATGTACTTCTTATGTTGCCTTTTTTTAggctttgtattttttaaaaattaaacattgttttgGAGCTGGATGTCTCAATACAAGACTTCGCATGaataatcttttatttgtatttgcacCTTATTTATAGAGCGATGCGACTAGGCATTAGAGCACGCTGACACTGAGCTGAACTGTTTTGagtacattatttaaaaagattttatattctttggcccattctttctatctttccctctcttcctctctcatatatatatatatatatatatatatatatatatatatatatatatatatatggtatatatatatatatggtccAGTTTTATTAGCAGATTTGGTTGCATTTTGTTCCAAAGTGAAATGAAGatggattaaagaaaaaaaagatggctgACATTTGGCCCCACTTCACTCCTCTTTATATCCACTGCACTGGGGGTTATATAGGTTTAAAATCTGTCATTATTCTGTGAGGTACTTTATATCTATCTAAAATCACTTTCTAAATGTCCTATGAATTGTACTATGAAATAATGTAAACAGCTCTTCTAGTAACACAATGACTCAATATGAACTTTTCTAATGTGATTAATATGAACATTAtacaaaaatgatttgtttcagtgtcagtgtgattCCAAATGCATCTGAATGTACTAtttattccttcctttcttcttctctcctgaTAGATTACTTCACATACATATGATTGCCTTATATGCCTGTGTGAATTGTGTGTCagaatgaaagaacaaaaaaatatagttgtatgtaaattatcttaaaaatgtgattaaaatatgAAGATTTAAAGTCA

Function

NR:

description
reticulophagy receptor FAM134B isoform X1

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

RNA

RNA id representative length rna type GC content exon number start site end site
TU82468 False 520 lncRNA 0.30 1 23331016 23331535
XM_026936871.2 True 3022 mRNA 0.41 9 23331017 23346573

Neighbor

gene id symbol gene type direction distance location
and2 LOC108267411 coding downstream 8405 23318535 ~ 23322611 (-)
e2f5 LOC108268108,LOC108437220 coding downstream 39018 23285036 ~ 23291998 (-)
si:ch211-106h4.9 LOC108267629 coding downstream 67719 23230050 ~ 23263297 (-)
mrc1b LOC108268341 coding downstream 156637 23150126 ~ 23174379 (-)
clul1 clul1 coding downstream 280903 23041108 ~ 23050113 (-)
nol7 NA coding upstream 29883 23376456 ~ 23382888 (-)
LOC113540008 NA coding upstream 62841 23409414 ~ 23418890 (-)
LOC117597115 NA coding upstream 83727 23430300 ~ 23442743 (-)
LOC113540011 NA coding upstream 100232 23446805 ~ 23463725 (-)
LOC113540113 LOC108267226 coding upstream 119844 23466417 ~ 23505181 (-)
G69503 NA non-coding downstream 52234 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 57402 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 275633 23054514 ~ 23055383 (-)
G69254 NA non-coding downstream 521767 22808906 ~ 22809249 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding downstream 525108 22803386 ~ 22805908 (-)
G69551 NA non-coding upstream 50091 23396664 ~ 23397963 (-)
LOC113540115 NA non-coding upstream 106660 23453233 ~ 23454221 (-)
G69649 NA non-coding upstream 247758 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 304478 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 575533 23922106 ~ 23922538 (-)
lrrcc1 lrrcc1 other downstream 24082 23292048 ~ 23306934 (-)
LOC113540019 LOC108268143 other downstream 694928 22629615 ~ 22636088 (-)
G68760 NA other downstream 1395847 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1960006 21354619 ~ 21371010 (-)
G68462 NA other downstream 2001766 21326046 ~ 21329250 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 133392 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 146806 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 148462 23495035 ~ 23495897 (-)
LOC117597075 LOC108267226,LOC108267227 other upstream 149384 23495957 ~ 23497021 (-)
LOC113540012 NA other upstream 166883 23513456 ~ 23514039 (-)

Expression


Co-expression Network