G69570


Basic Information

Item Value
gene id G69570
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23447463 ~ 23457206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82521
GATGAATAGTTCACAAAATATTCAACTCAATAATCACAAATAGTGAGGACATACTGTAAGTAAACGAACctaattttgtaatattttgcatattacattattaatatcCATCTGTGGACATTATTTCCAACACAGAGGCCTTTAggatgtaattttttattattattaagattgTTTAAGTCCAGATTGACAGTGGAGGACATTCTGAGGACACAAAAGAGCAGATCATTGTCTTCTTGTTACCTTTTGGAATGTCTACTTCGTTGTCCTTAAAGCTGCTGTCATGTTGAACAGAGCAGGTGAATTTATTGTTCATGGCTTTGTGTTGGTCTATGATGAGCATGCTGGTTATTTGGACCGGattctcatctctctgctccaGCTGCTCAGCATCTTTCAGCTCCAATATGCTTCCCCTCTGATCTTTTGCTTTCCACGTGAATCTCACCAGGTCTGGGAACATGCCTCTCGCCTGGCACAGCAGAACAGACTTTCCATTTTGTGGCTTGGACACTGGATACGCGGACACTTGAGGCTGTTTGACCTCCTTCCCATTTTCTGCATCATCAGAGGACATGCAAATATTCTTATTAGTGAGCAATCAATAAACACAATGAAAGAatagctattttatttatttatttatttgagtcaGTTGGGTAATCATACACAATTGGGAATTATGatgtttcaaattaaaaatgcaatatttttctcATAAGCACAGTGAAATGGGCCTGGACTATTGACAGAACAGGGACATCAAACATCAGGTCCTCGAGGAGCACAGCACTGAATGCAGAATTTACAGTTTACTCCAGGTTACAGTTTACTTAGGTTTATGTATAGTGAAGTTATGATCATGATTCTTGAATGTGGCGGTAAGCCTTGTTATTTAACCCAAACAATGGAGGAATTTTAACTGTTATTGAAATAGTCATTTTTATCACCATCAGTTACCAACTTCTACAAGATATCCTTGAACCAagagttatttattaattcatttattatttttcgtGTTTACACATTCCACTTTATCCCTGAGTTCTGCAACAAGGTCtaatttaactttttcagcatgTTACTGGATTAGCAGTGCTAAGTATGGATCAGGACTACTTACAAACAGGGCCATCAAACAACAGGAGAACAGCACTGAATGCAGAATTTACAGTTTACTCCACATTAACCCATCTAATTCCCCTCATACTGTAATTAGTCATTCATTATTAAAGGACATGACATGTTAAACAATAAACTACACTGACATTTAcacactatttaaatgtttagtgaataaaaaaatgacataactTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82521 True 1320 lncRNA 0.36 2 23447463 23457206

Neighbor

gene id symbol gene type direction distance location
stard3nl stard3nl,LOC107713985 coding upstream 45733 23392658 ~ 23401730 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding upstream 56462 23387009 ~ 23391001 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 71278 23353969 ~ 23376185 (+)
rnf182 rnf182 coding upstream 97836 23345058 ~ 23349627 (+)
ackr4a LOC108267630 coding upstream 170662 23273523 ~ 23276801 (+)
otulinb LOC108268091 coding downstream 137755 23594961 ~ 23608201 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding downstream 157234 23614440 ~ 23641469 (+)
mycb LOC108268289 coding downstream 191065 23648271 ~ 23650633 (+)
LOC113540051 NA coding downstream 556650 24013856 ~ 24016743 (+)
LOC113540619 NA coding downstream 563859 24021065 ~ 24024165 (+)
G69522 NA non-coding upstream 78786 23367661 ~ 23368677 (+)
G69514 NA non-coding upstream 115934 23331033 ~ 23331529 (+)
G69449 NA non-coding upstream 155465 23291410 ~ 23291998 (+)
G69443 NA non-coding upstream 162537 23284554 ~ 23284926 (+)
G69294 NA non-coding upstream 443361 23001998 ~ 23004102 (+)
G69641 NA non-coding downstream 153747 23610953 ~ 23611157 (+)
LOC117597085 NA non-coding downstream 197716 23654922 ~ 23767863 (+)
G69722 NA non-coding downstream 301178 23758384 ~ 23774271 (+)
G69735 NA non-coding downstream 389439 23846645 ~ 23849514 (+)
G69736 NA non-coding downstream 397869 23855075 ~ 23857571 (+)
G69509 LOC108267411 other upstream 127120 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 795016 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1685162 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1807306 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2123496 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 570900 24028106 ~ 24106223 (+)
G69971 NA other downstream 651589 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1401820 24859026 ~ 24871263 (+)
tnr tnr other downstream 2250621 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 2439811 25897017 ~ 25902006 (+)

Expression


Co-expression Network