G69870


Basic Information

Item Value
gene id G69870
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23921800 ~ 23922696 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82897
TGTCAAATGCAATATTTCATTATGCTGCTTGCAGGAATGGACTTTTTAGTCGTAGTTTATTGTACACTGGGATACACTGAGCATTGATCATGCAGTAGATGCTGGTGAAACAGTGAGGTTTTAAAAGGATACGATGGTGCACAAGAAAAGAGGAACAGCAAAAAGTCTAAATGCACTCActctcatatacactcaccatccactttattaggaacacccgtacatctgcacattcatgtagttacctaatcagccaatcatgtggcagcagcgcaatgcaaaaaatcatgaagatacAAGTTCAGGAGCttcaaacatcaaacatcagactgaagaaaaagtgtgatctctgtgactttggtTGTGGCACGGATGTTGGTACAAGGAGAGctggttgagtatttcagaaactgctgatctcctgggaatttcatacacaccagtctctagagtttacacagaatggtgtgaaaaacaaaaaacagtgagtgagtgacagttctgtgggtggaaacgccttgttgataagaaaggtcagacgaaaatggccagattggttctgGAAGGATGTattaactcatataatcactctttacaaccgtggtgagcagaaaagcagctcagaatgCACAGAACATCAGACCTGGAGGTGGATgtgctacaaaagcagaagaccactccTCTctgccaaaaacaggaatctgaggctatcatgggcacaggctcacccaaactggaccgttgaagatttaaaaaaaaaaa
>TU82898
tcaaacatcagactgaagaaaaagtgtgatctctgtgactttggtTGTGGCACGGATGTTGGTACAAGGAGAGctggttgagtatttcagaaactgctgatctcctgggaatttcatacacaccagtctctagagtttacacagaatggtgtgaaaaacaaaaaacagtgagtgagtgacagttctgtgggtggaaacgccttgttgataagaaaggtcagacgaaaatggccagattggttctgGAAGGATGTattaactcatataatcactctttacaaccgtggtgagcagaaaagcagctcagaatgCACAGAACATCAGACCTGGAGGTGGATgtgctacaaaagcagaagaccactccTCTctgccaaaaacaggaatctgaggctatcatgggcacaggctcacccaaactggaccgttgaagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaatcacctgtttttttcctaatcttcaactgtccattttGGGTGATTGTTGttcagagatcacactttttccccattctgatgtttgatgtgaagctcttggcctgtacatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82897 True 762 lncRNA 0.42 1 23921800 23922561
TU82898 False 580 lncRNA 0.41 1 23922117 23922696

Neighbor

gene id symbol gene type direction distance location
mycb LOC108268289 coding upstream 271167 23648271 ~ 23650633 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding upstream 280331 23614440 ~ 23641469 (+)
otulinb LOC108268091 coding upstream 313599 23594961 ~ 23608201 (+)
stard3nl stard3nl,LOC107713985 coding upstream 520070 23392658 ~ 23401730 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding upstream 530799 23387009 ~ 23391001 (+)
LOC113540051 NA coding downstream 91160 24013856 ~ 24016743 (+)
LOC113540619 NA coding downstream 98369 24021065 ~ 24024165 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding downstream 198857 24121553 ~ 24127236 (+)
ccr9a LOC108267400 coding downstream 211980 24134676 ~ 24136808 (+)
LOC113540392 NA coding downstream 222386 24145082 ~ 24148968 (+)
G69736 NA non-coding upstream 64229 23855075 ~ 23857571 (+)
G69735 NA non-coding upstream 72286 23846645 ~ 23849514 (+)
G69722 NA non-coding upstream 147529 23758384 ~ 23774271 (+)
LOC117597085 NA non-coding upstream 153937 23654922 ~ 23767863 (+)
G69641 NA non-coding upstream 310643 23610953 ~ 23611157 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding downstream 17545 23940241 ~ 23943072 (+)
G69946 NA non-coding downstream 85007 24007703 ~ 24009860 (+)
G69966 NA non-coding downstream 160910 24083606 ~ 24084218 (+)
G69987 NA non-coding downstream 215939 24138635 ~ 24138888 (+)
G70129 ccdc24 non-coding downstream 643549 24566245 ~ 24566613 (+)
G69509 LOC108267411 other upstream 601457 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1269353 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2159499 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 2281643 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2597833 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 105410 24028106 ~ 24106223 (+)
G69971 NA other downstream 186099 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 936330 24859026 ~ 24871263 (+)
tnr tnr other downstream 1785131 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1974321 25897017 ~ 25902006 (+)

Expression


Co-expression Network