G69946


Basic Information

Item Value
gene id G69946
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24007703 ~ 24009860 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU82993
tttattttctaatgtgtgtaatcatggTAAAGCACTGTTTCATAAAGTAAATCTTTGCCCATAACtacatttcctttttaacaGTGAAGAACTGAACCCAAATGTTCTATTTAAGCATATCAATTTTCACTTCTACTATAACAagatatgtgtttttttttaaatgatttgctACTGTATTAACTATTTCAATACacagattaaaattttttttagtccttcattatctctctctatatatagtTAGAATTTGTACTGCTGTGATTTGTACAGCTTCACATACATCCGAGACATCCACCATGCTTCTCATTATCCTCAAATACTTCTTTCTGCATCATAATGGTTGACCCTCCGGTGTGATAAACACTACACTTATTTCGAATTTCACTGCGCAGTccTGTAATGACTTCTCCCAGTCTGCCACAATCAACCAGTTCGGTACCATCAGTTGTCTTACACACAAGGCAGTCAATCAGGGGcgttctttctttttgtgtaaCACATTCATCTCGGTGCTGATATGCATCCTTAGAAGCCTTCTTGCATGTTGTGACTTTCAGAAGGACATTTACGTTCAGGCTGCTCTCCATAGTCTGTGAACAAGGGTGTCGCATAGCCACCTTAGTACACGTgtctttaaaataatgaattgaaGGCATTGTGGTA
>TU82994
ATGTCATACACACcgttctttctttttgtgtaaCACATTCATCTCGGTGCTGATATGCATCCTTAGAAGCCTTCTTGCATGTTGTGACTTTCAGAAGGACATTTACGTTCAGGCTGCTCTCCATAGTCGTCGGAGTTTTTCTGAGTTTTTCATAAGCAACATGATGACCCGCTCCAAAGTGCTGGTTTGCCTTTTTCAGCGCTTtgtcaatgtgtttttttaatacatcaGGCAAGCTTCTGTAGTTATTAAATGTCTGGGCAGAAACCAGTAGAATCAGGGCTGCCAGCAGCAACACCTTTAGTGCACCATCCATGTTGACGACTGAACTGTGTGAGTTTGCAGATTTCAGATCATGTCTAATGTT

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00360 Phenylalanine metabolism
ko04972 Pancreatic secretion
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU82993 True 666 lncRNA 0.36 3 24007703 24008663
TU82994 False 367 lncRNA 0.42 2 24008464 24009860

Neighbor

gene id symbol gene type direction distance location
mycb LOC108268289 coding upstream 357070 23648271 ~ 23650633 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding upstream 366234 23614440 ~ 23641469 (+)
otulinb LOC108268091 coding upstream 399502 23594961 ~ 23608201 (+)
stard3nl stard3nl,LOC107713985 coding upstream 605973 23392658 ~ 23401730 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding upstream 616702 23387009 ~ 23391001 (+)
LOC113540051 NA coding downstream 3996 24013856 ~ 24016743 (+)
LOC113540619 NA coding downstream 11205 24021065 ~ 24024165 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding downstream 111693 24121553 ~ 24127236 (+)
ccr9a LOC108267400 coding downstream 124816 24134676 ~ 24136808 (+)
LOC113540392 NA coding downstream 135222 24145082 ~ 24148968 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 64631 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 85007 23921800 ~ 23922696 (+)
G69736 NA non-coding upstream 150132 23855075 ~ 23857571 (+)
G69735 NA non-coding upstream 158189 23846645 ~ 23849514 (+)
G69722 NA non-coding upstream 233432 23758384 ~ 23774271 (+)
G69966 NA non-coding downstream 73746 24083606 ~ 24084218 (+)
G69987 NA non-coding downstream 128775 24138635 ~ 24138888 (+)
G70129 ccdc24 non-coding downstream 556385 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 557140 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 560788 24570648 ~ 24570850 (+)
G69509 LOC108267411 other upstream 687360 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1355256 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2245402 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 2367546 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2683736 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 18246 24028106 ~ 24106223 (+)
G69971 NA other downstream 98935 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 849166 24859026 ~ 24871263 (+)
tnr tnr other downstream 1697967 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1887157 25897017 ~ 25902006 (+)

Expression


Co-expression Network