G70142


Basic Information

Item Value
gene id G70142
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24585427 ~ 24585907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU83226
GTGAACACAGTTAGGCATTCGTTTGTGAAAGCAGatgaagtgttttgttgttgttgttgttgtttgtttgttgtgtatCATGATACCTGGTGACTCAGTGGAAATTACAGTCTGGTTTACCTCAGAGTGGATTTCTGTGTACATGTCTATGAGTGCATCCCCAAGTATAGCCCTTATCTCAGGAAGCTCAGAGTCTGGCACACACTCCTTTATCAGGCTCcatacacactgctgctgctggacaGGCTCCATTAAGCCACTGACATCATTCATTTAACACCATTCTGTGCACTCtgcagtataatatataataagcaTTGCATGAAAATCAATCAGTAAAGCTAAGCTGCTCAGAAAACAGTGAGTTTGGAAACATACAAGACTAATAACAACAGTTACAGgaagttatttatataatcagATAGCACATAagcatgaaaaaatattaaaatacctGGCTAAAACTATTTTTCCACTGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83226 True 481 lncRNA 0.38 1 24585427 24585907

Neighbor

gene id symbol gene type direction distance location
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 24149 24507205 ~ 24561278 (+)
klf17 LOC108267392 coding upstream 106623 24476189 ~ 24478804 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding upstream 176130 24294636 ~ 24409297 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452 coding upstream 401673 24178967 ~ 24183754 (+)
opn4.1 opn4m2 coding upstream 408673 24175258 ~ 24176754 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding downstream 1300 24587207 ~ 24597109 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding downstream 206388 24792295 ~ 24807404 (+)
klhl20 klhl20,LOC106569069 coding downstream 408970 24994877 ~ 25013306 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding downstream 435706 25021613 ~ 25047317 (+)
astn1 astn1 coding downstream 684315 25270222 ~ 25552839 (+)
G70140 NA non-coding upstream 588 24584614 ~ 24584839 (+)
G70139 NA non-coding upstream 2051 24583176 ~ 24583376 (+)
G70138 NA non-coding upstream 10857 24574336 ~ 24574570 (+)
G70134 NA non-coding upstream 14577 24570648 ~ 24570850 (+)
G70130 NA non-coding upstream 18109 24567000 ~ 24567318 (+)
G70204 NA non-coding downstream 96074 24681981 ~ 24749913 (+)
LOC113540553 NA non-coding downstream 253314 24839221 ~ 24849487 (+)
G70520 NA non-coding downstream 412009 24997916 ~ 24998225 (+)
LOC117597084 NA non-coding downstream 742311 25328218 ~ 25330540 (+)
G70695 NA non-coding downstream 970930 25556837 ~ 25557761 (+)
G69971 NA other upstream 475538 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 479204 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1265084 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1932980 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2823126 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 273119 24859026 ~ 24871263 (+)
tnr tnr other downstream 1121920 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1311110 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1630157 26216064 ~ 26224038 (+)
G71385 NA other downstream 1642857 26228764 ~ 26229191 (+)

Expression


Co-expression Network