G70204


Basic Information

Item Value
gene id G70204
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24681981 ~ 24749913 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU83289
aaaaaaaaaaaccaaaaaagatcACATACAGTAGGAGAAATATGGAATGCTAAACATCCTCATGcctcacatatttttttttaagatattctTATAAACATTAGATTTATACATCCTCTCATTCTCAACCAATCGCAACTGAAGTGTGTCCTGGTGCCAATGCAAATACAAACACTATTAATATCAAATTAACTGTGTTTCACTTAAAGATTGGGAATAATGAGAGATCAGCCGTGTCCTCGTCTATTAATGGCTTCGCAGATGAACGAACACAACACACAAGAATGAACGATATTCAAAGTGTCCAGAGTTGTTCTGGCTATAGGATTTACAATAGATCTGACTTTAACGCATCTCCATACCATGGAATAATAACACTTCAGACAGCCATAATACATACAAATAACAacatctcactttttttttgttttgtacagaACAGCAAATCACAGCAAGCTACACAGCCCTAGAGAAATTCAAAACTTTCACCAAAGTACCACGTAATCTTTCAGGGAGTTTAGGTGTCTGAAGTCCAGTCTTTGCATGATGGGATTCTACTCTACAGAATCTGCTATCTACTTATATTTTTACACATGTATtcatacatttcaaataaaataacctCTAGAAATCAATACAATTCTCATATATCTTATACGTCGATAATAGGGCCAACATCACACCTGTTGAAGATATTTCTTCTTCTGAGGTTAATTTGTGTGAAACGTCTTAAAGATCTGTGTTTGACTTAAACGTGCATTCCTTTAAGACAAAGTGGTGCGAATGTTTCACTCTTCGGTAAACAACGGTTAAAAACagacacagggaaaaaaaaaaaaaaagaaagaaaatacatttaaataatttactatGTATTTACATAGTCAGGCTGTGTATCCAACACAGCgtcattcttcttttgttgtttgtctTGCAGACGGCGTATTCTCTAATCTCCCATTTTTACTTT

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU83289 True 970 lncRNA 0.34 2 24681981 24749913

Neighbor

gene id symbol gene type direction distance location
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding upstream 84872 24587207 ~ 24597109 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 120703 24507205 ~ 24561278 (+)
klf17 LOC108267392 coding upstream 203177 24476189 ~ 24478804 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding upstream 272684 24294636 ~ 24409297 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452 coding upstream 498227 24178967 ~ 24183754 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding downstream 42382 24792295 ~ 24807404 (+)
klhl20 klhl20,LOC106569069 coding downstream 244964 24994877 ~ 25013306 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding downstream 271700 25021613 ~ 25047317 (+)
astn1 astn1 coding downstream 520309 25270222 ~ 25552839 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding downstream 893489 25643402 ~ 25664410 (+)
G70142 NA non-coding upstream 96074 24585427 ~ 24585907 (+)
G70140 NA non-coding upstream 97142 24584614 ~ 24584839 (+)
G70139 NA non-coding upstream 98605 24583176 ~ 24583376 (+)
G70138 NA non-coding upstream 107411 24574336 ~ 24574570 (+)
G70134 NA non-coding upstream 111131 24570648 ~ 24570850 (+)
LOC113540553 NA non-coding downstream 89308 24839221 ~ 24849487 (+)
G70520 NA non-coding downstream 248003 24997916 ~ 24998225 (+)
LOC117597084 NA non-coding downstream 578305 25328218 ~ 25330540 (+)
G70695 NA non-coding downstream 806924 25556837 ~ 25557761 (+)
G70763 LOC107732307 non-coding downstream 808514 25558427 ~ 25561346 (+)
G69971 NA other upstream 572092 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 575758 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1361638 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 2029534 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2919680 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 109113 24859026 ~ 24871263 (+)
tnr tnr other downstream 957914 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1147104 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1466151 26216064 ~ 26224038 (+)
G71385 NA other downstream 1478851 26228764 ~ 26229191 (+)

Expression


Co-expression Network