LOC113540553


Basic Information

Item Value
gene id LOC113540553
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24839221 ~ 24849487 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU83566
AGTCGTTCTAGAGGAGGAGCGTGATGCAGAGTAGCGCTCAGGGCCCGGCCTGCGCTCACAGTGGAGTAAAAAAGCATAAGGCTCCATGCCTTAAGGCTCCTCTGGCTGGATATGGAACTTCTCAGGACAGCCGGGACCAAACTGAAGCTCCTCCAGAGCCTCAGAGAACGCTGTTATCTGTTCCATCTTGTTAGAGAACATCTGGAGAAAATATCTGGAGAGCTACTTATTGGGAGTGGACTTTGAAGAACAGAGATGTTATGTGTCATTTGGGAAAATTGATTGGTTGATATTTTCCCCCGGTGACCTCCGTTGTGGAAGAATTATCCCTGGAACCACTTCCAATCATcgttaaaatgtaataatgtgtatacAAGTGGAAACAAGCTGAAATGGCCACTCTCCCCATTCAGACTGTGCCAGTGACCAACATCTGCGCTCTTTGGGTTATAGTGTGGTAGAAGGCGGAAAAATAAGAACAACAGCTTGGAAAAGCACATGAACTCACAAAAGAATGCCTGGCTCTGAAAAGGTGACGTTTAAATGCTGAGCGTCACTCTGTGATGTTTCGTGAGGTGCAGGACTTGGCTTGCTTTGTGAACAGATTTGGGAAAAGGCCGTGTTCACAGTGGCTAAGTTCCGCTCCTCTGAGGCTAACTCTCAGAATGGCTGGAAGGCAGTAATCTAGGCACCATGTGAACACAGACTCCAAGAGTAAAGAGCACTGACCTAAGGTAAGCTTTTGTTGTCatatttaaatgatcatttctataCAGATGGGAAGGAAACTGGATCCTGGATCAGTATTCTGTCATTGGGACAGTTTGCAAACACAGACTTGGGGTGCCAGCTTTCATCTCTCGCCAGGGTGATCTGATTAAGTAGGTTCTTATCCATAGGAATATGCACATGCTGAATAATATATAGAAACTACATAGGCTGAGACATGTTTCTCAAGTCCTCACAGGcaaataaatgattattcaAACACACTTTCATGTCTAAGGCCAGGCCAGTGTTTATGCAAACAAAAATGAACTGAGCTACACAAAAAGCCACATCAAGAACCATTTCAAACAAGTCATACACTCAAAACATATGTTCTGACAGGGACATGTCACCATTCATATGAAAAGGCTATACATACCATAATGTAGACAAGTCTTCACAAATTCATGAAAGAAGGCCAACGTATTACCTTGAAAGAATTGTTCAAATAACATTCATTTTTGCCATTAAGAACCATTTCATTCACCGTAATAACGTATAAGGGACCATAATAAAACAGCTGTCATAGATGTGTACATCAAGCAACATGgctgaaatgtatgtgatgGGTTGAAGCATTAGAGCACAAGGAACAACAGCTTACATGATGAGAAACGTCAATCACGTCAAATTCGTGATACACCCACGGATATGTTCTAAGACAGCAATAAATACAGGACAGTGTGAAGAGATGTATCTTGGGATTGTGACTACATAATGCGACAGTTGTGACTGCCTCAGTGGCAGGAAAAAGGAGGACTGGG
>TU83567
AGTCGTTCTAGAGGAGGAGCGTGATGCAGAGTAGCGCTCAGGGCCCGGCCTGCGCTCACAGTGGAGTAAAAAAGCATAAGGCTCCATGCCTTAAGGCTCCTCTGGCTGGATATGGAACTTCTCAGGACAGCCGGGACCAAACTGAAGCTCCTCCAGAGCCTCAGAGAACGCTGTTATCTGTTCCATCTTGTTAGAGAACATCTGGAGAAAATATCTGGAGAGCTACTTATTGGGAGTGGACTTTGAAGAACAGAGATGTTATGTGTCATTTGGGAAAGTAAGGCTGTTGCAATGTTTTTGTGTACTGTGCAATATTAAAACCCTTTGGTCCAGA
>XR_003404038.2
TTTGTGTGCATGCGTCTCAGTTCCTGAGTCGTTCTAGAGGAGGAGCGTGATGCAGAGTAGCGCTCAGGGCCCGGCCTGCGCTCACAGTGGAGTAAAAAAGCATAAGGCTCCATGCCTTAAGGCTCCTCTGGCTGGATATGGAACTTCTCAGGACAGCCGGGACCAAACTGAAGCTCCTCCAGAGCCTCAGAGAACGCTGTTATCTGTTCCATCTTGTTAGAGAACATCTGGAGAAAATATCTGGAGAGCTACTTATTGGGAGTGGACTTTGAAGAACAGAGATGTTATGTGTCATTTGGGAAAGTAAGGCTGTTGCAATGTTTTTGTGTACTGTGCAATATTAAAACCCTTTGGTCCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83566 True 1532 lncRNA 0.43 3 24839247 24849487
TU83567 False 334 lncRNA 0.48 2 24839247 24846721
XR_003404038.2 False 360 lncRNA 0.48 2 24839221 24846721

Neighbor

gene id symbol gene type direction distance location
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding upstream 31817 24792295 ~ 24807404 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding upstream 242112 24587207 ~ 24597109 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 277943 24507205 ~ 24561278 (+)
klf17 LOC108267392 coding upstream 360417 24476189 ~ 24478804 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding upstream 429924 24294636 ~ 24409297 (+)
klhl20 klhl20,LOC106569069 coding downstream 145390 24994877 ~ 25013306 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding downstream 172126 25021613 ~ 25047317 (+)
astn1 astn1 coding downstream 420735 25270222 ~ 25552839 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding downstream 793915 25643402 ~ 25664410 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding downstream 1101667 25951154 ~ 25953899 (+)
G70204 NA non-coding upstream 89308 24681981 ~ 24749913 (+)
G70142 NA non-coding upstream 253314 24585427 ~ 24585907 (+)
G70140 NA non-coding upstream 254382 24584614 ~ 24584839 (+)
G70139 NA non-coding upstream 255845 24583176 ~ 24583376 (+)
G70138 NA non-coding upstream 264651 24574336 ~ 24574570 (+)
G70520 NA non-coding downstream 148429 24997916 ~ 24998225 (+)
LOC117597084 NA non-coding downstream 478731 25328218 ~ 25330540 (+)
G70695 NA non-coding downstream 707350 25556837 ~ 25557761 (+)
G70763 LOC107732307 non-coding downstream 708940 25558427 ~ 25561346 (+)
G70778 NA non-coding downstream 735839 25585326 ~ 25585534 (+)
G69971 NA other upstream 729332 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 732998 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1518878 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 2186774 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 3076920 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 9539 24859026 ~ 24871263 (+)
tnr tnr other downstream 858340 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1047530 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1366577 26216064 ~ 26224038 (+)
G71385 NA other downstream 1379277 26228764 ~ 26229191 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015606 dre-mir-27a non-coding NC_007113.7 CM002886.2 33902325 ~ 33902455 (+)
eurasian perch (Perca fluviatilis) G138201 NA non-coding NC_053124.1 CM020921.1 32504747 ~ 32544401 (-)
eurasian perch (Perca fluviatilis) G27710 NA non-coding NC_053114.1 CM020911.1 16383992 ~ 16384249 (+)
tiger barb (Puntius tetrazona) G24799 NA non-coding NC_056702.1 CM032071.1 620177 ~ 620588 (-)
mexican tetra (Astyanax mexicanus) G137596 NA non-coding NC_035912.1 CM008315.1 55706 ~ 68862 (+)