G70520


Basic Information

Item Value
gene id G70520
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24997916 ~ 24998225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU83637
ACCACACACACTTGTCTGTTGTTGGCTCAGGTCATGTTTGTACTCTCTTGAGAGATTAGTCTATGCAAAGTGCATGACTCATGCTTTTCAGAGTGTGCAGAGTTTgaatagagtagaataaaaACTTTGTCATATGACTGAGGCCAGTGGATGTTCCTGATACAGCCTTACTGCAAAGAAATGACAAAGgtggacagaataataatccaggacacacacacacacacacacacacacagggctaaTACAGGATATAATGTACTTACAGTACTTAAAAGAAACCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83637 True 286 lncRNA 0.41 2 24997916 24998225

Neighbor

gene id symbol gene type direction distance location
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding upstream 190512 24792295 ~ 24807404 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding upstream 400807 24587207 ~ 24597109 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 436638 24507205 ~ 24561278 (+)
klf17 LOC108267392 coding upstream 519112 24476189 ~ 24478804 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding upstream 588619 24294636 ~ 24409297 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding downstream 23388 25021613 ~ 25047317 (+)
astn1 astn1 coding downstream 271997 25270222 ~ 25552839 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding downstream 645177 25643402 ~ 25664410 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding downstream 952929 25951154 ~ 25953899 (+)
cacybp cacybp,LOC100304883 coding downstream 956731 25954956 ~ 25964158 (+)
LOC113540553 NA non-coding upstream 148429 24839221 ~ 24849487 (+)
G70204 NA non-coding upstream 248003 24681981 ~ 24749913 (+)
G70142 NA non-coding upstream 412009 24585427 ~ 24585907 (+)
G70140 NA non-coding upstream 413077 24584614 ~ 24584839 (+)
G70139 NA non-coding upstream 414540 24583176 ~ 24583376 (+)
LOC117597084 NA non-coding downstream 329993 25328218 ~ 25330540 (+)
G70695 NA non-coding downstream 558612 25556837 ~ 25557761 (+)
G70763 LOC107732307 non-coding downstream 560202 25558427 ~ 25561346 (+)
G70778 NA non-coding downstream 587101 25585326 ~ 25585534 (+)
G70780 NA non-coding downstream 588028 25586253 ~ 25586458 (+)
kif2c kif2c other upstream 126653 24859026 ~ 24871263 (+)
G69971 NA other upstream 888027 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 891693 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1677573 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 2345469 22649810 ~ 22652447 (+)
tnr tnr other downstream 709602 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 898792 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1217839 26216064 ~ 26224038 (+)
G71385 NA other downstream 1230539 26228764 ~ 26229191 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other downstream 1290065 26288290 ~ 26292784 (+)

Expression


Co-expression Network