G71163 (tnn)


Basic Information

Item Value
gene id G71163
gene name tnn
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25923952 ~ 25928740 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84331
TGGCTGTGATGCGGTCTGGTTCACTGCTGATACCCTTGATGACAGCCTGTACTTGCACGATATAGGTAACTCCAGGTTTGAGGCCTGTGATCAAGTAGGAATTTTCAGTGTTGGGAACACGGATCTCCTGAATGGTTCCCTCATTTCCATAAGGATAGTAGGAGAGCATGTAGTACTCGGCTTTATTTACATGTTCCCACTCCACCAGCAGGGACACATCAGTCACCCTGATCACACGAAGGTCTTTTAGCCCCAGTACCATAGAGCAGTCATTTCCGAAAAAGCCCTCGTCGCAGAGACACTGTCCATCGATACAGCGGCCATTCTCTTTGCAGTCACTTGGGCATTTCTGCATGCTGCAGGTGTCTCCAGAGAAGCCctcaaagcacacacacttgccaTCCACGCAGTGGCCCTTGTCATTGCAGTCATCAGGACATGTGAGCAGGCCACAGTCGTGGCCCATGTAACCAGTGTGGCAAATGCATCGTCCATCTACACAGTAGCCATTATCATTACAATTATCCGGACAGGTGGAGACGGAGCAGTCTGGACCCTCCCAGCCTGCATCACATTTGCAGCTGCAAGTGTTGTGCTGGTATACACCATGGCCATTACAGCTTGTGTCTCCACTACCTGAGCTTCCTCTGCAGCAGCCCTGAGCACACTGGGACTTCAGGTAGGTAACCTCCTCCTCCAAACCATTGACACGGTACAGCAGGGATTTGAATTCCTCTGAATCAGCGCAATTGCAGCTAGATGATGGAAACTTAATGTTGTGCTTGAAAATAATGTCTTTCTCCCCATCCACCGTCATGACCTGACCTTCTGATGCTTGGTCCTGGGAAGGCAAAACTGCCTGCTGGTCCTGCTTACAACCAGAGTCAATCCTGTACACATGGCTAAATGTGACTGCTTTCTCAGACTCTTCTGCCTGTGTAACAAGTGAGACTACACCCAGCATCCCAAACAGGAGCAACCAAAGCCAATTTAGCCTGGGAAGCATGGCCTGTGAAA

Function

symbol description
tnn Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion and neuron projection extension. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in corneal epithelium and head. Orthologous to human TNN (tenascin N).

NR:

description
PREDICTED: tenascin-N isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84331 True 1017 lncRNA 0.50 4 25923952 25928740

Neighbor

gene id symbol gene type direction distance location
cop1 rfwd2,LOC107722073,LOC107726924 coding upstream 259542 25643402 ~ 25664410 (+)
astn1 astn1 coding upstream 371113 25270222 ~ 25552839 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding upstream 876635 25021613 ~ 25047317 (+)
klhl20 klhl20,LOC106569069 coding upstream 910646 24994877 ~ 25013306 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding upstream 1116548 24792295 ~ 24807404 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding downstream 22414 25951154 ~ 25953899 (+)
cacybp cacybp,LOC100304883 coding downstream 26216 25954956 ~ 25964158 (+)
plk3 plk3,LOC107726922,LOC107557223,LOC107722069,LOC107658359,LOC107678927 coding downstream 45141 25973881 ~ 25979456 (+)
rasal2 rasal2,LOC107678931 coding downstream 114183 26042923 ~ 26124146 (+)
si:ch211-284o19.8 LOC108414935 coding downstream 385603 26314343 ~ 26318878 (+)
G70813 NA non-coding upstream 233835 25653438 ~ 25690117 (+)
G70808 NA non-coding upstream 297015 25626713 ~ 25626937 (+)
G70798 pappa2 non-coding upstream 310276 25613444 ~ 25613676 (+)
G70782 NA non-coding upstream 333765 25589967 ~ 25590187 (+)
G70780 NA non-coding upstream 337494 25586253 ~ 25586458 (+)
G71322 NA non-coding downstream 110442 26039182 ~ 26039383 (+)
G71329 NA non-coding downstream 199879 26128619 ~ 26128826 (+)
G71373 NA non-coding downstream 276818 26205558 ~ 26205786 (+)
G71374 NA non-coding downstream 279580 26208320 ~ 26208544 (+)
G71381 NA non-coding downstream 296172 26224912 ~ 26226337 (+)
LOC113539772 kiaa0040 other upstream 21946 25897017 ~ 25902006 (+)
tnr tnr other upstream 42842 25707827 ~ 25881110 (+)
kif2c kif2c other upstream 1052689 24859026 ~ 24871263 (+)
G69971 NA other upstream 1814063 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 1817729 24028106 ~ 24106223 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 287324 26216064 ~ 26224038 (+)
G71385 NA other downstream 300024 26228764 ~ 26229191 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other downstream 359550 26288290 ~ 26292784 (+)
LOC117597079 LOC108267150,LOC107738160 other downstream 424449 26353189 ~ 26375826 (+)
gng7 NA other downstream 943936 26872676 ~ 26881470 (+)

Expression


Co-expression Network