LOC117597207


Basic Information

Item Value
gene id LOC117597207
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25884128 ~ 25885257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84465
CACTGATAATCAGTGTGGAGATCATGTGATCTGCATTGTGTGGCTGCTTGTCTTGGGTCACATGAggcatgtcacatgacacatCAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCTACTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAACAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGGCCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGTGGGGAGTATTGAACACTCTTGCAAAGTAGGCCAATACTTCTTGTATGTTGGTTTTATGTGTGCTGGTGAATGAAATTGGGGATTAAtgtgcattatttctttttaaagggaCCAGGCCAGCCA
>TU84466
CACTGATAATCAGTGTGGAGATCATGTGATCTGCATTGTGTGGCTGCTTGTCTTGGGTCACATGAggcatgtcacatgacacatCAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCTACTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAACAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGGCCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGGTAGTTTGTCTTATGTGATTTTcgttttttaaattgttttatattggtatttaaaatgtgttgattaTGTACTTGTATTTGTAGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGTGGGGAGTATTGAACACTCTTGCAAAGTAGGCCAATACTTCTTGTATGTTGGTTTTATGTGTGCTGGTGAATGAAATTGGGGATTAAtgtgcattatttctttttaaagggaCCAGGCCAGCCA
>XR_004578114.1
GTGGAGATCATGTGATCTGCATTGTGTGGCTGCTTGTCTTGGGTCACATGAggcatgtcacatgacacatCAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCTACTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAACAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGGCCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGTGGGGAGTATTGAACACTCTTGCAAAGTTCTCTGTACAAGGCCGGATCTGCACCTCACTACTGCTCCTTTCAGTTGGGGGCTGCACTGAGGGGACACTATTTTGGTGTGTACTGGTAACATGCAACACGGTGTGGTATTTTGTAGTGGTAATTACTGACCTTGTGTGTGCCGTGTTTGCTATGTTGCATGCTTGTATGGTGTTGGGTttgttgtgtctgtctctctcaccaggGCCTCCTAGGAGAGGAGCTGTGGGTGCCGTGCCGACCCGACCTTATTAGTTTGAGAATCTCCGGCCAGTTTCCCTTCGTCTCTTTTTCACATTAGCAATTGTACCTattcaaaattgtaataaatttgaGCTTGTGTACA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0097659 nucleic acid-templated transcription biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84465 False 442 lncRNA 0.46 3 25884659 25885257
TU84466 False 526 lncRNA 0.42 2 25884659 25885257
XR_004578114.1 True 677 lncRNA 0.48 4 25884128 25885243

Neighbor

gene id symbol gene type direction distance location
pappa2 pappa2,LOC107568983,LOC107722077 coding downstream 252928 25561334 ~ 25631200 (-)
LOC117597083 NA coding downstream 458952 25423546 ~ 25425176 (-)
brinp2 brinp2,LOC107720848,LOC107700985,LOC107658350,LOC107562711,LOC107722070 coding downstream 628279 25139815 ~ 25255849 (-)
cenpl cenpl coding downstream 861712 25013206 ~ 25022416 (-)
eif2b3 eif2b3,LOC107722074,LOC107700990,LOC107599900,LOC107720854 coding downstream 920248 24919527 ~ 24963880 (-)
tnn tnn coding upstream 19183 25904440 ~ 25932761 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding upstream 85377 25970634 ~ 25973005 (-)
parp2 parp2 coding upstream 434030 26319287 ~ 26329275 (-)
sdr39u1 sdr39u1 coding upstream 453478 26338735 ~ 26367975 (-)
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding upstream 561201 26446458 ~ 26452831 (-)
LOC117597162 NA non-coding downstream 101234 25731393 ~ 25782894 (-)
G71037 NA non-coding downstream 273688 25610237 ~ 25610440 (-)
G71013 NA non-coding downstream 312603 25571309 ~ 25571525 (-)
G70970 NA non-coding downstream 329899 25553077 ~ 25554229 (-)
G70906 astn1 non-coding downstream 439080 25409714 ~ 25445048 (-)
G71298 NA non-coding upstream 18517 25903774 ~ 25904073 (-)
G71299 NA non-coding upstream 60954 25946211 ~ 25946576 (-)
G71313 NA non-coding upstream 117344 26002601 ~ 26002826 (-)
G71354 NA non-coding upstream 222209 26107466 ~ 26125084 (-)
G71358 NA non-coding upstream 241995 26127252 ~ 26127479 (-)
ccdc24 ccdc24 other downstream 1298080 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 1579202 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 2352112 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 2366458 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 2367769 23515699 ~ 23516359 (-)
ltb4r2b NA other upstream 486664 26371921 ~ 26376408 (-)
G71596 NA other upstream 586823 26472080 ~ 26551030 (-)
G71832 NA other upstream 1211345 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 1318526 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 1510100 27395357 ~ 27395429 (-)

Expression


Co-expression Network