G71354


Basic Information

Item Value
gene id G71354
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26107466 ~ 26125084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84536
tttctaatgtcttttacacattcctcaactttattaagctggtgtctgtcatctggctttgctgaaacatacaactgtgtgtcatcagcgtaacaatggaagctaataccatgattatggataattttgcccagaggtagcacatatagagaaaagagcagtgggcctaaaccagagccttgcgggacaccaaactttaacttagtatgagaagagaagtcaccatttacgtttacaaactgataacgatcagtcaaataagacctgagccaggaaagggctgttcccttaatgcctactacattttctagtctatcgaggagaatagcatgatcaatggtatcaaaagctgcactaaggtcaaccctgatcagaggccagtagtaagtcatttaccactttaaccagtgctgtctctgtgctatgatgaggactaaatcctgactgatacatttcatgaatgttattcctatgtaggtatgagcataagtgctgtgctacaacattttctaggatcttggagataaagggaaaatttgatattggcctatagttggacaattgacaggggttgtggtcagatttttttatcgggggtttgattgcttctgaaattatctgtttgaggaaacatgtaggtaagggatccagcatacaggttgattattttgatgaggaaattagtgaaattagttcggtctcttgagtaaaacattctaatcattgctctgatatcattttattattatctacaaggttagttataaaactgtctggttttaaattaatagtctgaattttttgcctgatattttcaattttaccactgaaaaaaattcatgaagtcatcactgctatatactgattgtgtgcatgttgctATTGtagtcttattcctagttaattttgctacagtataaAATAAGAATGTAGGATTATTTTAGTTATCTTCAATTAGAGTGGAGAGAtgcattgatctagcagcactaagagcatttctatagctcagaaggctctccttcTATGCTGTCTGAAATACTaacaatttagtttgacgccatttacattctaatttttgagtggtctgttttaaggtgcacaCTCGCAATCGTTATACCAGGATGCtggctttttctctctaatgatTTTGGAGCTACCTCTCTAGTGTGTAGCAGAACCTTGATTCTAAGCATCATGATCCAATCATGGCtggtaactctgggagattactgataaaactctgcaGTTGCTGACGTGAATGTACGTTTGATGTGGTAGCGtagcaaggtgcatatattatgattaagacatattttaaatgagatgagaaaatgatctgagatagcttcagactgtggaaatgtgactgtATTTTCTATagttaatccgaatgttagtattaaatcaagaaggtgaccaccactatgagtgggtcctattatgttctgattaacccctactgaatctagaatggacacagctgctgttctcagagggtcttcttggttatcaaaatgaatattaaagtctccaacaattaatgctttgtttaaagaaacaaccaggttagagaggAAATCTGCAaagaattcagaatatggccctaggggtctgtaaataataattagcggaatcgactgggtagacttattttttgtggctatgtatattatgttggtataaagaacttcaaatgtgttcaatttatgactaggtttttgtgtgatgcctagattatcattataaataactgcaacacctcctcctctgccagttagacagggctgatgtatataactgtatccgggcggactagcttcatttaatgctacatactcatttggtttaatccacatttctgttaaacacagtacattaaactcctgatcagtaatagtttcattaacactAAGCATTTTAGACATAAGAGATccaatatttaacagtcctagcttcagatcaaagatGCTGCCTGCACattcagtatgatttaattttatgataattaggctactaaaacaaacttatttgtatttgtagagtatttctaaattttttttaggtcggggaacagacacagtctcaatatgttgaaacctgagtgacgactcagtgcagctagcagatggtcagattagcctgcttgtctgctcccttgGCTCTGGAgtcactgattaactaggcctgttctgagactataagctatgctacaagaaatgagagcagcaccgaGTGGGGTGAATACCGTCCCACCCTAACAGGCCAACCTTGCcctaactagtgctgctggCGCATTGGGATgtggccagagcatattactccTCCTGGGATAcacctaactagtgctgctggtgcccctcaaggcctagctaatttgaTGTGCCCtaagatagagtctcctataaccagagctctttcaggtttctcagcaggtGCTTCaatgaggagagcaaacctatTAGACatgtgaagcggagaggagtggtgctcccatgCGcgagcattagcattagctttggctttgaaATTATGCCACCGAGTCTTCACCCATTCGCCCTGCTGTGAGGGCcgtaatgccggagttgggggactGCTAACtctgcctaaggcatccagactttctcCTACAGAAAAtacactgctctcactctcactaatcctctctagagtctggatgcgcacctctaatgccgcaatcttctccatcagagagctaactaatatacacttagcacaaataaagctattactaacaacagaggaagaatgactaaacatcctgcactcaacacacttaACAAACAATGTTTGACATGTTTAACgtaccttagtcgaagatttgtttatattttttagaaGGCATGGATCCGGCGTGGATGGCCTCTGCTCgctgtctttagacaaaagacaaaaaactccttcgaaaaaattaaaatacggcagataggaaaatgaaaaatacagatGAAAATGATAGTGCAGAATTAGtgataaaatgaaagaaacagtatagctTAAACACCGATGCAGGGAAGAAACTTCGGGCAAACAATTCGAAAAGGCACATCTAAAGATTGACTGGGATTATGCCTTGTTTGAAGAGTTTTTAGGGACCCCTGTAAACTCTATGCTGAGAGTGAGGATTGGATCATCAGTCGATTTCACCTGATCTCAGTTTTAGAGGTTTTAGGCACAGGCATATTTCAAAGAGAAATTGGAGACAGGTCTGGCATTTCCCAACCAACTATGAGTTGAATAATTACATGTCTTACCTTCATTCTTATCGCTCATGCCgcaatacagtatattgcattTCCAAAAGCGGCagcagaaaagacagaaaaaattatgaattttcATGCCACTGCAGAGTGCCTAAATGTAACTGGAACAATAGAATACACATATACTcatagattatttaaaaaaatcttatttactTATTAGACAAAACACTGGTATAAGTgccaaataaaccatttttgttttgctctacTTTGTACAAAAGTAGTTCTCTATCGTATTGGGACTATCTCTCCACTCCGTTACATATTCTATATGTAAAGGGATTGACCCCCTGAGTCTGGTGATGTGGATACTCTGGCTGTGCCGGTCACACCCTAATTAGTGCCCTTATAAAACACCCATAGTGGCGTGAATTCAGTGCTTCTTTAATCTCCACTTTGGGTGCAAGATGTTGAAGCTATATACTAAATACAGACTTCATTCAGCGTGTGATCCACTTACACTGAAGGATGGGCGTCTGTCTCTGGGCAGCCTCCCAGGATTGCTGCTGCGaagttttttcattattttcactttgtgGGTGATTGAAGTTCTCTGTAAGGTGTATTGCACATGGTGGCGTAAGCTAACGTGCCTCGGAGCAGCCTTGCGTTCTTATTGAGAACCAAGCAAACTTCAGATATGGTGGTTGTACAATGCAAATAACTAGTAGACTTTAACGGAGTGCAAGTATAAACATTCGTAAGTTACTTCTGGGCAGCATCAGCATCCGAGTGCCTTCAGAAAGACACAAGTTCGAATCCcacttgtaaaaaaataaaaaataagtaaataaataaaataaataaataaaaatgatgagcACTGGTGGTCATGTTTGTGAGACTTGTGCTTTGCCAATTGAAGATTGGCATGATAGATGTGTTGCATGTTTTGGTTACGATCATGCATTAAAGACTTGTTAGGATCCCTCATCATGCATGTACTGTTTCATTATGCCCTTACATAGAAGGGAGGGCCGTTTCCATTTTTTTGGAGGGAAACGCCCAAAGTCTCCTCCTCAGGGGGAACAAGCTAAACATATGAGAAGAGACTGTCAGTGAGGGCTCCTCTTATGCAGGATCTTCCCCTGTTCTCAGGTTAGAGATCCTTTCTCCTCCGGAACATAAATGAGTTAACTCTGTTCCTCTCAGATGGGGATGGGGATTTTGTTGAGCAATGTCATGATGAAGATGATTCAGCAGTAGAGGAAATGTCTATGGCTGTTCAATTAAAAGAGGTTATTGGTAGACCAGCCAAACCGTTGGATATTCCTATGCCAGAGAGTCTTTCTGACCCGCCCTTGAGATTTGAAGGGGAGAGAGGCTCGGCCTGGCCCTGTTAGGGTTCCCCTTCTTCCAGACTTACTGCTGTTGTGCAGAAACAATTTGTCAAGCCCACAGCCTCTTATAGGTGGTATGAAACCAGCAGACATCTGGTCAATATGGCTTGGGGAGAAAAAATTGGATTCGGGCTGCTGCCCTCAGTAGACAAACCCATGACTGTCTTTGTATCACCCTCCCCAAGTCTGTCTTGGGCAGGGCTGGCTGCCCTAGTAAAAACTGCAGAGTGATGGATGGGTTGCTCTCCATTATCTCATTATACCTGTGGGAGTTGGGTTGTAAGGCTCAGGGAGAGCAAGGGCCTTTCAGTTTGTTGGACAAGCTGAGGCAGGTTTTCTCCCTTCTGATAGCAGTTACGAAAGAGCAGGCGGAGGCAGCAGGAAAAGCCATGGCAGCTCTTTCAGTGGCGAGGCGTCACTTGTGGCTGTCACAGTCTTGGCTCCAGCAGGATGACCAGGACTGTTTCTCTAGACTGCCTGTTGAGCCTTCTACCATGTTTGGGCCAGACGCTCTCCATCTATTTCAGCAGGCCCAAGAGGCCAGTCGCTATGCCAGGGCAAGCACCCTCAAGCACCCTTGGTCAGGGTAGAAGCAGCTATAGGCCTAAACAGACCTAGCCTCGGGATTTGCCAGTCCAGTTGGGTTCTGGAGACCTGAGATCTCAGCTTGAGTCAGCTCGGAGGTGAAAGGCTCAGTGACAGCGCAGGAAGAGGGAGGGTGGGAGGGGCAAAGTACACCCGCCACCTCACTCCTGACAGTGTACTGGACTCAGGCTGCCTTGGCTCCCCATCAGCAAGGGCTGTAGCTTGGGCATCGCTGAGGCCAAGCCCCTGGGTCCTTGCAACTATGACTCAAGTGTATTGGTTGGGTACCTCCGATTCAATACAGAGAAATGTTGCAAGCAGAGATTATTGGACTCCTCAAAAAAGGAGCCATCAGAGAGGTGGGAAAAGGTGACCGACGCAATCCATGCACCTCTTCATCATCTAGGTATCAGGGTCCTGAATTATCTAGAAGATTGGTTGGTCTGTGcccaggctaaaaaaaaaaaaaaaaaaaaaaaaaagtgccagcAGCACGTGTCTGTGCTTTTGGATCATATCCAATACATGGGTCTTTGTTTCAATATGAAGAAGGGCAGGCTGGAGCCATCTCAAGTCACTCAGGTTCTGGGTCTGATTTTGGACTCCAGAAATGCAATTGTGACTCTGACCtcagagagacaggaagcaATCAAAGCTTGCCTCTCTCTCAAGTCAATTTTGGGTTGTGTCTCCACCTAATGGGCCTTATGGCAGCTACAGTACCAGTTGTGCCACTTGCCCTTCTTCACATGTGACCTGTGCGGTGATGCCTCTTACACCAAGGGTGGTTGAGAAGATCTGGCACAGATTTGGGCCTGCAATAGCAGACCTGTTTGCCTTAGATGCCTTGGCACATCAGTGGCCTCAGGGCCAGCTTTATGCATTTCCCCCATTCAGCCTTCTCCAACCTCTTCTTCAGAGAATGAAGGTGGAGAATGTGAGACTAATTTTGATGGCCCCAAACTGGCCCCACATGATGTGGTTCGCAGACTTCCCACCCCTCCTTCATGGGACACCGTGGGAACTCCTAGTCAGGAGGGATCTACTGTCTCAGGCACAGAGCATGCTGTTCCAACAATTCCCTCAGGGTCTCAAACTCTGGGCTTGGCCCCTGAAAGGGCTGGACTAACAGCTATGGGACTACCAGATAGAGTGGTCAGGACACTGGAATGAACTCGAGCACCCTCAACAAGGGCAGCCTATTCTTTGAGGTGGAGGGCTTTTCAGTCTTGGTGTGAGGGGGACAAGGTGAATCCCTTCACATCTACAGTCCATGATACCCTACAGTTCCTGCAGGAACAACTGGATGCAGGGAAATCTGCATCCACCCTCAAGGTCATAGTGGCAGCAGTTAAGGCTGCTGAAGTGGGGGATCACGAACTATCAGAGCATTGCTGTGGCCTGATTTCTCAATTCCTTAAGGTGTGGAGCATGCAAAATAAGACCTACTGTGCCCCAGTGGGATTTAAATTGAGTCCTGACGGCACTATAGCACCCCCCTTTCAAGCTTCTTGAATATGTGGACCTCTAAAGACAGCCTTCCTTCCATCAGTAACCTCTGCCAAGAGAATTAGGGAACTCTCTGTCCATCAAAACTGCTGTAGGTTCATGCCAGGGGGTTTAGGGGTTGTACTGCACCCTAACCCAGCTTTTCTGCCAAAAGTATTATCTGCTCTACACCTAAATCCATCAGTTGAGCTTCAAGAGAGTGAGGGGATGGAATGAAAACAGTCACTAATTTGCATGGTGAGAACACTATCAGTGTGTATCTACATCACCCAAAGGcattttcagacaaactgatatGCTGTTTGTATGCTTTAAATTAGAATGTCAAAGCAAGCCACTATCTAAGGCGAGGCTATTGGACTGGGCTGTGGAGACAATCCACCTGGCCTATAAGGAAACGGACGGGCCAATATGCGGATTGCAACCTCATGGGCCTTGTGGCGAGGTGCCTATCTGAAGGAGATTTGTGGGAGCAACCAGGAATAAATATGTCATCTAGGCTGGGCTTCAGGTCCAGCCATGGTGTCATCCCTGCATCAGCCAGGGTGATAGGTAAGgtcttttttcctccattctggCATATTGCAAGGGAGGGGAGCTGTTGGCAGCATTTGGCACCTGGCTTGAgaatgtaattatgtaaataatggacatagtttgtctgtttattgcACCTTCCCTTCGTGGTGTGTCTTATAGAGCTCCCCCGTACACACAGAATATGTAACAGAGTGGAGAGATAGTCTCAATACGAAAGAGAATGTTTGGTTATGATGCAACCTTTGTTCTCTGAGTGGACAGACTATCTCTCCACTTTGAGGCCGCTCTGGGACATGTTCCGATCAGAAGATAGCACTGAATTCATGCACTGaattcaaatgttttaaaggGCACTAATTAGGTCGTGACCGGCACAGCCGAGGTGTCTTAAAGAGTATCCACGTCACCAGACCCAGGGGGTCAATCCCCATACATACAGAAAATGTAACAGAGTGGAGAGATAGTCTCTTCACTCAGAGAACAAATGTTACATCATAGCCAAAAGTTCTACTTCATCGTTGCTGAAGTCCATCTTCATAGGCATGCTTAGTCATGTCGTCTGTAACAAGCAGGGCCACGAGCCAACTGCTTGGATTTTTAAAGGGTGCACAAGCACATCAACTAGGAATGTGTGGGATTTATCAATGGCCACTGCATACTGCTTTGTGTATGCACATTTCATAAATACCAATTTTCTTATGTATACTGGCAGTACCTCTGCACAAATTTACAACTTGTTCTATGCACACTTTGATAAATGGGACCCCAGGTGTGACAGAATCTTTGCaaaatagatatttttaatgTCGTATATTTGGATATTTGAAAAATTGAGAAATTGTGTTAATCAGTAATACACATGTAAGCATTCAATGCAAACAGAGTTACTTCAGTTACTCATAATAgatacataatatacatacataatacatgCACTTATACCAAGTTAAATACCTGTGGCCCTTTGAGGCTACATAAATATGCCAGAGTGGCCCAGGTAGAAATTGAGTTTGACATCCACTTTGTACTGCTTTTAGTTTACACACATACCTGCAGATAATGCTCTTTATTTGGCTGTCCTTCTCCTCCTGTTGCCGCCGCAGGCGCTCCTCACTGTCTTCCAGGCGAGTCTTGTACTCCAGCAGCAGCCTCTGCATTTGTTGCTCTTGTGCCACAAGTCGGCGTTCATACTCTTCTAAGCGGCggccagacacacacagccggTCTTTCAGCTTTGTGATCTCTTGCTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84536 True 8513 lncRNA 0.43 3 26107466 26125084

Neighbor

gene id symbol gene type direction distance location
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding downstream 134461 25970634 ~ 25973005 (-)
tnn tnn coding downstream 174705 25904440 ~ 25932761 (-)
pappa2 pappa2,LOC107568983,LOC107722077 coding downstream 476266 25561334 ~ 25631200 (-)
LOC117597083 NA coding downstream 682290 25423546 ~ 25425176 (-)
brinp2 brinp2,LOC107720848,LOC107700985,LOC107658350,LOC107562711,LOC107722070 coding downstream 851617 25139815 ~ 25255849 (-)
parp2 parp2 coding upstream 194203 26319287 ~ 26329275 (-)
sdr39u1 sdr39u1 coding upstream 213651 26338735 ~ 26367975 (-)
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding upstream 321374 26446458 ~ 26452831 (-)
sppl2 sppl2b coding upstream 453710 26578794 ~ 26595990 (-)
ccnl1b ccnl1 coding upstream 547663 26672747 ~ 26678848 (-)
G71313 NA non-coding downstream 104640 26002601 ~ 26002826 (-)
G71299 NA non-coding downstream 160890 25946211 ~ 25946576 (-)
G71298 NA non-coding downstream 203393 25903774 ~ 25904073 (-)
LOC117597207 NA non-coding downstream 222209 25884128 ~ 25885257 (-)
LOC117597162 NA non-coding downstream 324572 25731393 ~ 25782894 (-)
G71358 NA non-coding upstream 2168 26127252 ~ 26127479 (-)
G71361 NA non-coding upstream 4564 26129648 ~ 26129854 (-)
G71363 NA non-coding upstream 5533 26130617 ~ 26130848 (-)
G71370 NA non-coding upstream 31079 26156163 ~ 26156851 (-)
G71376 NA non-coding upstream 86359 26211443 ~ 26211682 (-)
ccdc24 ccdc24 other downstream 1521418 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 1802540 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 2575450 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 2589796 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 2591107 23515699 ~ 23516359 (-)
ltb4r2b NA other upstream 246837 26371921 ~ 26376408 (-)
G71596 NA other upstream 346996 26472080 ~ 26551030 (-)
G71832 NA other upstream 971518 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 1078699 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 1270273 27395357 ~ 27395429 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G396051 NA non-coding CI01000230 null 172701 ~ 181747 (+)