LOC117597118 (LOC108261462,LOC108261092,LOC108261095)


Basic Information

Item Value
gene id LOC117597118
gene name LOC108261462,LOC108261092,LOC108261095
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26216064 ~ 26224038 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84559
AGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCCCAACAGAACTCAACATTTTGCTCATGattctctctcactgagctgtGAAGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggagtgttagaTTGTTCATGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTCACtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTCACTGAGGGACATCTTCTGACTCTACGCTGTTTATATCGCAACACAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTTCAGACACAGACTACAGGAGAGATGATCCTCTATAACATCTCAAAGTCAGATGAAGGTTTCTACCACTGCAAACacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGtgtcAGGTCCATCATGTGTAGAAGCTCCATTCTCAGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGCTCACACTGATGAAGAGAGAATTGAGAATGCAGTCATAGAGGAGTGAGCAAAGTTCATCTAACAAAAAGACGAAgtgtttaatgtaaaaataatttcataatttattattctttagggctttgtggggtttttaaaataatactgatttgtcattttaatgtcatgctgttatttgcTCTGCATCTTATAGACACCCTCGTTGTTCTGACTGGATTTGTTTAGCTAAAGCCTGCAAACCTCTTCATGAGGTGAAAGTTACTATGTGTGTAGTTTCTAATAAAGCTTACAGGCTGCTCATGCAAAACagagtaaaaatgaacaaatattcttaaaaatatttattggtCAGGAGAAAATTTTGATGCATTGTCTGAGGGTTGAGCTGTGCTTCTGCAAAATAACATCTGACATGTGGGAAATAAATGTGTCTGCTATTGGAGTGAGTTTAATCCCAACATGGAGACCTGCACATTAAAACCTCAAAACACTTCATCTAACTGTAATGAGGTTTAAGCAAGCACAGTAATCTGTGCAAGATGGTTGCTTTAAGTCCAGAAATTATAGAGTGATACTAGAGAATAAACTAACCCCCTTtcatcaaactgcattttgacagtttttcgTCCAATCAGAGTGTGCCACGTCACGAGGTCCCTCCCCtttttatccaat
>XM_034303850.1
ATGCAGGAGAAACAGTGTACCAGTGTAAAGCAGTTGAGCTGGAGaaactacaactactactacacaGAGCTCAGTGATCCTGTCAAGATTACAGTGAGAGcaAGACCTAAACCAGTGGCATCCATAAATCCTGATAaacaggtgttcagtggagacGCCGTCACTCTGAGATGTGACATACAGGATGAAGGTGTCTCTAGCTGGCAGTACAGCTGTCCTGTCAGTagtgaacaggtgtacaggatCAGTGGTGTTGAAGTGACCCACACAGGTAAATACACCTGtagaggagcagagagaggaggcTCACGCTCCTCACACttcagtgatgctgttacactgactgtATCAGAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCTTAActcaaataaaacataatcatgGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAATCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagcctttcacacacagtacagcaaTCCACAGCCAATATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCCCAACAGAACTCAACATTTTGCTCATGattctctctcactgagctgtGAAGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagggagtgttagaTTGTTCATGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTCACtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTCACTGAGGGACATCTTCTGACTCTACGCTGTTTATATCGCAACACAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTTCAGACACAGACTACAGGAGAGATGATCCTCTATAACATCTCAAAGTCAGATGAAGGTTTCTACCACTGCAAACacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGtgtcAGGTCCATCATGTGTAGAAGCTCCATTCTCAGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGCTCACACTGATGAAGAGAGAATTGAGAATGCAGTCATAGAGGAGTGAGCAAAGTTCATCTAACAAAAAGACGAAgtgtttaatgtaaaaataatttcataatttattattctttagggctttgtggggtttttaaaataatactgatttgtcattttaatgtcatgctgttatttgcTCTGCATCTTATAGACACCCTCGTTGTTCTGACTGGATTTGTTTAGCTAAAGCCTGCAAACCTCTTCATGAGGTGAAAGTTACTATGTGTGTAGTTTCTAATAAAGCTTACAGGCTGCTCATGCAAAACagagtaaaaatgaacaaatattcttaaaaatatttattggtCAGGAGAAAATTTTGATGCATTGTCTGAGGGTTGAGCTGTGCTTCTGCAAAATAACATCTGACATGTGGGAAATAAATGTGTCTGCTATTGGAGTGAGTTTAATCCCAACATGGAGACCTGCACATTAAAACCTCAAAACACTTCATCTAACTGTAATGAGGTTTAAGCAAGCACAGTAATCTGTGCAAGATGGTTGCTTTAAGTCCAGAAATTATAGAGTGATACTAGAGAATAAACTAACCCCCTTtcatcaaactgcattttgacagtttttcgTCCAATCAGAGTGTGCCACGTCACGAGGTCCCTCCCCtttttatccaatcagagcgcaCTGTGGTGGGTAGTCCCGCCCCCCTTTCAACCA

Function

NR:

description
PREDICTED: sialoadhesin-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84559 False 1375 lncRNA 0.41 5 26218126 26223996
XM_034303850.1 True 2051 mRNA 0.44 8 26216064 26224038

Neighbor

gene id symbol gene type direction distance location
rasal2 rasal2,LOC107678931 coding upstream 91918 26042923 ~ 26124146 (+)
plk3 plk3,LOC107726922,LOC107557223,LOC107722069,LOC107658359,LOC107678927 coding upstream 236608 25973881 ~ 25979456 (+)
cacybp cacybp,LOC100304883 coding upstream 251906 25954956 ~ 25964158 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding upstream 262165 25951154 ~ 25953899 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding upstream 551654 25643402 ~ 25664410 (+)
si:ch211-284o19.8 LOC108414935 coding downstream 90305 26314343 ~ 26318878 (+)
mettl17 mettl17 coding downstream 103889 26327927 ~ 26338595 (+)
nfatc4 nfatc4 coding downstream 160879 26384917 ~ 26444378 (+)
myo9b LOC108267238 coding downstream 241733 26465771 ~ 26502494 (+)
mfsd14a2 hiat1a,LOC108413745,LOC107659405,LOC107738165 coding downstream 279070 26503108 ~ 26515244 (+)
G71374 NA non-coding upstream 7520 26208320 ~ 26208544 (+)
G71373 NA non-coding upstream 10278 26205558 ~ 26205786 (+)
G71329 NA non-coding upstream 87238 26128619 ~ 26128826 (+)
G71322 NA non-coding upstream 176681 26039182 ~ 26039383 (+)
G71163 tnn non-coding upstream 287324 25923952 ~ 25928740 (+)
G71381 NA non-coding downstream 874 26224912 ~ 26226337 (+)
LOC117597183 NA non-coding downstream 880 26224918 ~ 26225364 (+)
LOC117597184 NA non-coding downstream 1393 26225431 ~ 26226415 (+)
G71408 NA non-coding downstream 70717 26294755 ~ 26294982 (+)
G71482 NA non-coding downstream 239973 26464011 ~ 26464314 (+)
LOC113539772 kiaa0040 other upstream 314058 25897017 ~ 25902006 (+)
tnr tnr other upstream 334954 25707827 ~ 25881110 (+)
kif2c kif2c other upstream 1344801 24859026 ~ 24871263 (+)
G69971 NA other upstream 2106175 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 2109841 24028106 ~ 24106223 (+)
G71385 NA other downstream 4726 26228764 ~ 26229191 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other downstream 64252 26288290 ~ 26292784 (+)
LOC117597079 LOC108267150,LOC107738160 other downstream 129151 26353189 ~ 26375826 (+)
gng7 NA other downstream 648638 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 1160769 27384807 ~ 27406398 (+)

Expression


Co-expression Network