LOC117597203


Basic Information

Item Value
gene id LOC117597203
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26260689 ~ 26289916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84635
AGCAATAATTTATTTCCCTAATGAATGTTACACATGCTGCTGTATTAGTTGCTTAATCACAAGCGTTCGTCTTCCACATCACACATATTCTCCTGTTTTTGTGTTAAAGTTCATCTACatgacaaacaaaacagaaatgacaGAACTGAGGTTGTCCTCATTATCGATTTTTCTGAGTGTGAACACTTCTTAATGTGAGTGAAATCAATCTGTCTGCTTCTCATTTagtaaaaggaaaacaaactcttaatgatgattatttatttacatttgagaGAATTTGAATAACTGGACGGAAATAGGCCGTGCCCCCACACTGGAGTCACCACCTGCTCAACCAGTCAGCTTCTTCCTGACACAGTGCACATTCACTCCATGACCTGGGCAGATATGAGGTTTTCCATTTCAACAGCTACACTTACCCATAATCCCTTTCTCTACATCATGacacaaaaatactgcatatgTGTAGGTGaataaaacagcaaacaaaacaaacatactGTTATAAGGCAGAGGTGgagaggtgagacaggtgagaagGTGCTCCTCGATACGACCTCCGGGGAACGTCCTGGTGCAGAACGGACATAGCActgctgacagagagagagaaaCCCTATCCACGCCTCTGAAACTGGTCTGGCGGTCCGGACCCGCGCCGATCTCGCAGTGCTGTTCCGCCCGGACGAGTGTCTCCGTGCACCGGCTAGTCGCTCAGCTGAGGCCCGAAGCGCGACACTGCCCGCTGGTTCCTGTGAGGAGAAGCGCTCGGGGCTTCCGGGACTGTTGTCATCGTTATCGATCTCCGGTTCAATAGTGCGGCCGGTACCGTTATCGCTGTCCGTCGGGGGAACGCGGTGGCCGGTGTCCGAGTCACTGCCTTCTTCGCTGCGGCTCTGTTTCGCGTCTGAATCGCGGTCAAAGCTGGAGGAGAAATCGAGCGCGAGGCTGCTGGGCCTGGAGCTGCGGATCCGCCGAAAAGGCTCTCGCTTTACGCCGCCGTCCTTCTCCAGCGGTCCGCACACCGATTCCTCTTGTAACCGACTCGATCTGGTCCCCATAATGCCGAGAAAAAAACTTTGTGATTAAACTGTTCGATGTATTTTGCGTTCCCGAGCGTTTACATGGTACTAAAAGTCTAAAACAGAGCCAAGTTATAAAACTTATCTTTTTCCTTTCTGGTCTCGCAAGCTTAGCATTAGTTCACATTCGTTTTGGCTGTTTTCATCAAACCCCGCCCCTCAACGTTACGACTTTCTGATTGGCTAATCCTGCTCGTCGATTTGAGCTATTTAGCCAATCATTGCAGGAGGGCGGGATCTATCGGAATAGTGGTAGTTTAAAAGGAATAACGTACTACAGGAGatattttgtgcaaaaaaattaaaattagaatgGAAACCTCCGTTCcccatttcttttttcacatatGTGAGCAAAAAAgtgtcccagaatgcaatgcagctatacaatgTGGTGGTGTTAGAGACTCTGTAGAGACTCTGCTTGACTAGTTAGCGAGATGGTGGACCAAGATCTCCTTTTTGTTCTTTGCTTCCTGCTGGACCCTGTGGACTCAGCTCCAGCAGCAGGATGGAGCTCAAAGTGCTGCaccttcttgtgtgtgtgtgtgtgtatgaggggtgtcctgtgatggactggtgtctcatccagagtgtattACTACCTCTTGGCCAGTGTTCCTGCTGACAATGactttttgtgttgattttgttataatttttgaTCACTAGATGATCAAAAATTATAACAAACATTTGATCACTTAATTTCCTGACACTAGAAACAATACATTTTCTAAATTGAATTTTTGTTTCAATCACTGCatcattttatttgtgatttaACACTTATCTAATGACTTAAAATAAATCCCTAATAATTCTTTCAcataataaagcatttttattatctAT
>XR_004578102.1
TATCGGAATAGTGGTAGTTTAAAAGGAATAACGTACTACAGGAGatattttgtgcaaaaaaattaaaattagaatgGAAACCTCCGTTCcccatttcttttttcacatatGTGAGCAAAAAAgtgtcccagaatgcaatgcagctatacaatgTGGTGGTGTTAGAGACTCTGTAGAGACTCTGCTTGACTAGTTAGCGAGATGGTGAGTGTGATGGAATTGACGGTGGTATTAgtatgaaagttgaagctttggaagttgatctgtttgagcagagtgtacagatgaagagGAAATACAAGGAGGGAATTTAAATGACTCCatttctgaatatgaatacactGAAATGTGGACCAAGATCTCCTTTTTGTTCTTTGCTTCCTGCTGGACCCTGTGGACTCAGCTCCAGCAGCAGGATGGAGCTCAAAGTGCTGCaccttcttgtgtgtgtgtgtgtgtatgaggggtgtcctgtgatggactggtgtctcatccagagtgtattACTACCTCTTGGCCAGTGTTCCTGCTGACAATGactttttgtgttgattttgttataatttttgaTCACTAGATGATCAAAAATTATAACAAACATTTGATCACTTAATTTCCTGACACTAGAAACAATACATTTTCTAAATTGAATTTTTGTTTCAATCACTGCatcattttatttgtgatttaACACTTATCTAATGACTTAAAATAAATCCCTAATAATT

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84635 True 1940 lncRNA 0.45 3 26260689 26289916
XR_004578102.1 False 728 lncRNA 0.37 3 26260721 26288211

Neighbor

gene id symbol gene type direction distance location
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding downstream 287684 25970634 ~ 25973005 (-)
tnn tnn coding downstream 327928 25904440 ~ 25932761 (-)
pappa2 pappa2,LOC107568983,LOC107722077 coding downstream 629489 25561334 ~ 25631200 (-)
LOC117597083 NA coding downstream 835513 25423546 ~ 25425176 (-)
brinp2 brinp2,LOC107720848,LOC107700985,LOC107658350,LOC107562711,LOC107722070 coding downstream 1004840 25139815 ~ 25255849 (-)
parp2 parp2 coding upstream 29371 26319287 ~ 26329275 (-)
sdr39u1 sdr39u1 coding upstream 48819 26338735 ~ 26367975 (-)
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding upstream 156542 26446458 ~ 26452831 (-)
sppl2 sppl2b coding upstream 288878 26578794 ~ 26595990 (-)
ccnl1b ccnl1 coding upstream 382831 26672747 ~ 26678848 (-)
G71386 NA non-coding downstream 31498 26228879 ~ 26229191 (-)
G71376 NA non-coding downstream 49007 26211443 ~ 26211682 (-)
G71370 NA non-coding downstream 103838 26156163 ~ 26156851 (-)
G71363 NA non-coding downstream 129841 26130617 ~ 26130848 (-)
G71361 NA non-coding downstream 130835 26129648 ~ 26129854 (-)
G71456 NA non-coding upstream 78770 26368686 ~ 26382522 (-)
G71469 NA non-coding upstream 112623 26402539 ~ 26412348 (-)
G71470 NA non-coding upstream 118059 26407975 ~ 26415752 (-)
G71471 NA non-coding upstream 119259 26409175 ~ 26414494 (-)
G71474 NA non-coding upstream 136342 26426258 ~ 26427374 (-)
ccdc24 ccdc24 other downstream 1674641 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 1955763 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 2728673 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 2743019 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 2744330 23515699 ~ 23516359 (-)
ltb4r2b NA other upstream 82005 26371921 ~ 26376408 (-)
G71596 NA other upstream 182164 26472080 ~ 26551030 (-)
G71832 NA other upstream 806686 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 913867 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 1105441 27395357 ~ 27395429 (-)

Expression


Co-expression Network