Gene
RNA
| Item | Value |
|---|---|
| gene id | G71456 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 26368686 ~ 26382522 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC106512273 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU84665 | True | 486 | lncRNA | 0.40 | 2 | 26368686 | 26382522 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sdr39u1 | sdr39u1 | coding | downstream | 711 | 26338735 ~ 26367975 (-) |
| parp2 | parp2 | coding | downstream | 39411 | 26319287 ~ 26329275 (-) |
| LOC117597050 | LOC107716899,LOC107653439,LOC107548609 | coding | downstream | 395681 | 25970634 ~ 25973005 (-) |
| tnn | tnn | coding | downstream | 435925 | 25904440 ~ 25932761 (-) |
| pappa2 | pappa2,LOC107568983,LOC107722077 | coding | downstream | 737486 | 25561334 ~ 25631200 (-) |
| si:dkeyp-66d1.7 | LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 | coding | upstream | 63936 | 26446458 ~ 26452831 (-) |
| sppl2 | sppl2b | coding | upstream | 196272 | 26578794 ~ 26595990 (-) |
| ccnl1b | ccnl1 | coding | upstream | 290225 | 26672747 ~ 26678848 (-) |
| slitrk3b | LOC108267197 | coding | upstream | 325560 | 26708082 ~ 26712304 (-) |
| copa | copa | coding | upstream | 388060 | 26770582 ~ 26786518 (-) |
| LOC117597203 | NA | non-coding | downstream | 78770 | 26260689 ~ 26289916 (-) |
| G71386 | NA | non-coding | downstream | 139495 | 26228879 ~ 26229191 (-) |
| G71376 | NA | non-coding | downstream | 157004 | 26211443 ~ 26211682 (-) |
| G71370 | NA | non-coding | downstream | 211835 | 26156163 ~ 26156851 (-) |
| G71363 | NA | non-coding | downstream | 237838 | 26130617 ~ 26130848 (-) |
| G71469 | NA | non-coding | upstream | 20017 | 26402539 ~ 26412348 (-) |
| G71470 | NA | non-coding | upstream | 25453 | 26407975 ~ 26415752 (-) |
| G71471 | NA | non-coding | upstream | 26653 | 26409175 ~ 26414494 (-) |
| G71474 | NA | non-coding | upstream | 43736 | 26426258 ~ 26427374 (-) |
| G71589 | NA | non-coding | upstream | 81508 | 26464030 ~ 26464318 (-) |
| ccdc24 | ccdc24 | other | downstream | 1782638 | 24565741 ~ 24586048 (-) |
| G70255 | rnf220 | other | downstream | 2063760 | 24304374 ~ 24304926 (-) |
| LOC117597117 | NA | other | downstream | 2836670 | 23531238 ~ 23532016 (-) |
| LOC113540013 | NA | other | downstream | 2851016 | 23516930 ~ 23517670 (-) |
| LOC113540114 | LOC108267227 | other | downstream | 2852327 | 23515699 ~ 23516359 (-) |
| G71596 | NA | other | upstream | 89558 | 26472080 ~ 26551030 (-) |
| G71832 | NA | other | upstream | 714080 | 27096602 ~ 27100858 (-) |
| G71909 | LOC108267490 | other | upstream | 821261 | 27203783 ~ 27204186 (-) |
| trnat-ugu_3 | NA | other | upstream | 1012835 | 27395357 ~ 27395429 (-) |
| trnat-ugu_4 | NA | other | upstream | 1013629 | 27396151 ~ 27396223 (-) |
