Gene
RNA
| Item | Value |
|---|---|
| gene id | G71470 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 26407975 ~ 26415752 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: RRP15-like protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU84680 | True | 232 | lncRNA | 0.42 | 2 | 26407975 | 26415752 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sdr39u1 | sdr39u1 | coding | downstream | 40000 | 26338735 ~ 26367975 (-) |
| parp2 | parp2 | coding | downstream | 78700 | 26319287 ~ 26329275 (-) |
| LOC117597050 | LOC107716899,LOC107653439,LOC107548609 | coding | downstream | 434970 | 25970634 ~ 25973005 (-) |
| tnn | tnn | coding | downstream | 475214 | 25904440 ~ 25932761 (-) |
| pappa2 | pappa2,LOC107568983,LOC107722077 | coding | downstream | 776775 | 25561334 ~ 25631200 (-) |
| si:dkeyp-66d1.7 | LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 | coding | upstream | 30706 | 26446458 ~ 26452831 (-) |
| sppl2 | sppl2b | coding | upstream | 163042 | 26578794 ~ 26595990 (-) |
| ccnl1b | ccnl1 | coding | upstream | 256995 | 26672747 ~ 26678848 (-) |
| slitrk3b | LOC108267197 | coding | upstream | 292330 | 26708082 ~ 26712304 (-) |
| copa | copa | coding | upstream | 354830 | 26770582 ~ 26786518 (-) |
| G71456 | NA | non-coding | downstream | 25453 | 26368686 ~ 26382522 (-) |
| LOC117597203 | NA | non-coding | downstream | 118059 | 26260689 ~ 26289916 (-) |
| G71386 | NA | non-coding | downstream | 178784 | 26228879 ~ 26229191 (-) |
| G71376 | NA | non-coding | downstream | 196293 | 26211443 ~ 26211682 (-) |
| G71370 | NA | non-coding | downstream | 251124 | 26156163 ~ 26156851 (-) |
| G71474 | NA | non-coding | upstream | 10506 | 26426258 ~ 26427374 (-) |
| G71589 | NA | non-coding | upstream | 48278 | 26464030 ~ 26464318 (-) |
| LOC113540239 | NA | non-coding | upstream | 81281 | 26497033 ~ 26499267 (-) |
| G71636 | NA | non-coding | upstream | 142477 | 26558229 ~ 26559138 (-) |
| G71693 | NA | non-coding | upstream | 246107 | 26661859 ~ 26663778 (-) |
| ltb4r2b | NA | other | downstream | 31567 | 26371921 ~ 26376408 (-) |
| ccdc24 | ccdc24 | other | downstream | 1821927 | 24565741 ~ 24586048 (-) |
| G70255 | rnf220 | other | downstream | 2103049 | 24304374 ~ 24304926 (-) |
| LOC117597117 | NA | other | downstream | 2875959 | 23531238 ~ 23532016 (-) |
| LOC113540013 | NA | other | downstream | 2890305 | 23516930 ~ 23517670 (-) |
| G71596 | NA | other | upstream | 56328 | 26472080 ~ 26551030 (-) |
| G71832 | NA | other | upstream | 680850 | 27096602 ~ 27100858 (-) |
| G71909 | LOC108267490 | other | upstream | 788031 | 27203783 ~ 27204186 (-) |
| trnat-ugu_3 | NA | other | upstream | 979605 | 27395357 ~ 27395429 (-) |
| trnat-ugu_4 | NA | other | upstream | 980399 | 27396151 ~ 27396223 (-) |
