Gene
RNA
| Item | Value |
|---|---|
| gene id | G71474 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 26426258 ~ 26427374 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU84686 | True | 223 | lncRNA | 0.43 | 2 | 26426258 | 26427374 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sdr39u1 | sdr39u1 | coding | downstream | 58283 | 26338735 ~ 26367975 (-) |
| parp2 | parp2 | coding | downstream | 96983 | 26319287 ~ 26329275 (-) |
| LOC117597050 | LOC107716899,LOC107653439,LOC107548609 | coding | downstream | 453253 | 25970634 ~ 25973005 (-) |
| tnn | tnn | coding | downstream | 493497 | 25904440 ~ 25932761 (-) |
| pappa2 | pappa2,LOC107568983,LOC107722077 | coding | downstream | 795058 | 25561334 ~ 25631200 (-) |
| si:dkeyp-66d1.7 | LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 | coding | upstream | 19084 | 26446458 ~ 26452831 (-) |
| sppl2 | sppl2b | coding | upstream | 151420 | 26578794 ~ 26595990 (-) |
| ccnl1b | ccnl1 | coding | upstream | 245373 | 26672747 ~ 26678848 (-) |
| slitrk3b | LOC108267197 | coding | upstream | 280708 | 26708082 ~ 26712304 (-) |
| copa | copa | coding | upstream | 343208 | 26770582 ~ 26786518 (-) |
| G71470 | NA | non-coding | downstream | 10506 | 26407975 ~ 26415752 (-) |
| G71471 | NA | non-coding | downstream | 11764 | 26409175 ~ 26414494 (-) |
| G71469 | NA | non-coding | downstream | 13910 | 26402539 ~ 26412348 (-) |
| G71456 | NA | non-coding | downstream | 43736 | 26368686 ~ 26382522 (-) |
| LOC117597203 | NA | non-coding | downstream | 136342 | 26260689 ~ 26289916 (-) |
| G71589 | NA | non-coding | upstream | 36656 | 26464030 ~ 26464318 (-) |
| LOC113540239 | NA | non-coding | upstream | 69659 | 26497033 ~ 26499267 (-) |
| G71636 | NA | non-coding | upstream | 130855 | 26558229 ~ 26559138 (-) |
| G71693 | NA | non-coding | upstream | 234485 | 26661859 ~ 26663778 (-) |
| G71695 | klhl6 | non-coding | upstream | 238843 | 26666217 ~ 26666592 (-) |
| ltb4r2b | NA | other | downstream | 49850 | 26371921 ~ 26376408 (-) |
| ccdc24 | ccdc24 | other | downstream | 1840210 | 24565741 ~ 24586048 (-) |
| G70255 | rnf220 | other | downstream | 2121332 | 24304374 ~ 24304926 (-) |
| LOC117597117 | NA | other | downstream | 2894242 | 23531238 ~ 23532016 (-) |
| LOC113540013 | NA | other | downstream | 2908588 | 23516930 ~ 23517670 (-) |
| G71596 | NA | other | upstream | 44706 | 26472080 ~ 26551030 (-) |
| G71832 | NA | other | upstream | 669228 | 27096602 ~ 27100858 (-) |
| G71909 | LOC108267490 | other | upstream | 776409 | 27203783 ~ 27204186 (-) |
| trnat-ugu_3 | NA | other | upstream | 967983 | 27395357 ~ 27395429 (-) |
| trnat-ugu_4 | NA | other | upstream | 968777 | 27396151 ~ 27396223 (-) |
