G71550


Basic Information

Item Value
gene id G71550
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26784572 ~ 26786560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84789
AGCAGGGTGAAGAGACAGCGACGGAGCTTGTAGTtccatacctacacacacacacacacacacacacacacacaggtttactctctcttgctctctgatAAAGCCGGGCAGTTACACTGCATTAGAATCAGGACACTGATGTTCGACCTTGATTTTGTAATCGTCTCCACCCGAGACAAACAGAGGCTGCTGCTTGTGGAAGTCGATCCCTCTCACCGGACCTgttcaacatacacacattagactataaacacacacacagagcattgaGGAAAAAATGTCGGACGCGTCTAACCGTCATGCTCGTCGAACTTATCGATGAGGGTGCACATGCGATAATCCCACAGCTGGATGACGCCGTTGTGAAGACTGGCCAGGATCCACGGCCGCTTCGGGTGGAAACTCAGCccTCACTCGAGCTGATTTGGTCTCGAATTTGGTTAACATCTCCGCGTTTCTGCGTGTCTAATCCAACAATCCAATCTAAAGATAGCTGGTGTGCAGAAGTGATTtctataattaataattcttctcttttctctctctctctctcgcggcTTCTGCACTTCCTCAGCTGACACGTCTACCGAAATAAAGTGTTTCCTGCGCGGAgtcaaataaagttttttttttgtgtccaaAACGTGACGGAGAAATCTCCACGTCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84789 True 668 lncRNA 0.48 2 26784572 26786560

Neighbor

gene id symbol gene type direction distance location
apoda.1 LOC108267187 coding upstream 14328 26766984 ~ 26770244 (+)
ifi44c2 NA coding upstream 19968 26751636 ~ 26764604 (+)
si:dkey-193b15.8 LOC108268053 coding upstream 46294 26735443 ~ 26738278 (+)
nrd1a nrd1a,LOC108268052 coding upstream 48976 26719230 ~ 26735596 (+)
pdcd10b pdc10,LOC108411198,LOC107557361,LOC103039132,LOC107706406,LOC105906142,LOC107684411 coding upstream 88248 26689037 ~ 26696324 (+)
gadd45bb LOC108267448 coding downstream 29501 26816061 ~ 26818849 (+)
sec62 sec62 coding downstream 37126 26823686 ~ 26831573 (+)
elavl1a elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423 coding downstream 60331 26846891 ~ 26854149 (+)
zgc:101744 LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183 coding downstream 70971 26857531 ~ 26865515 (+)
gpr160 gpr160 coding downstream 114287 26900847 ~ 26902366 (+)
G71519 NA non-coding upstream 116444 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 233546 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 320258 26464011 ~ 26464314 (+)
G71408 NA non-coding upstream 489590 26294755 ~ 26294982 (+)
LOC117597184 NA non-coding upstream 558157 26225431 ~ 26226415 (+)
G71557 NA non-coding downstream 21497 26808057 ~ 26856605 (+)
G71819 NA non-coding downstream 256143 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 287281 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 409441 27196001 ~ 27196373 (+)
G71868 NA non-coding downstream 430792 27217352 ~ 27217839 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 408746 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 491788 26288290 ~ 26292784 (+)
G71385 NA other upstream 555381 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 560534 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 882566 25897017 ~ 25902006 (+)
gng7 NA other downstream 86116 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 598247 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1516291 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1529844 28316404 ~ 28338173 (+)
gng5 NA other downstream 1971985 28758545 ~ 28761451 (+)

Expression


Co-expression Network