G71596


Basic Information

Item Value
gene id G71596
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26472080 ~ 26551030 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84851
GAATGCACCTCGTTGCTTTTATTAACAGCAGAAACGTATTAACACCTGGAAGCTCAGGCGTCTACAACACTTGGGCAAGAGGAAGATTAGTATGATTTCAGTATTAGAAAAAgagaacaacaataataataataataataataataataataaaagattaaagatGCAAAAGGTGCATCTCATCCATAacccaataaaatatttatcaaagCAGCACCTACTGGTCAGATCTGTCtgttctcacactcacacacacacacacacacacacacacacacacacacacacacacacacaccatagctTAAGATTCTGTACATTTCAATTTTGgctgaactgttcctttaatctAGAGACGTCAGAGCTTtgtcaccatgacaacaactCAAAACAGCACAGGCTTATGTTactgtcattaaaaatgtaaataaactcaAAACTGTGAATCAGGGGTCTGAGATATAAACAACCACTTAACTGGCAGTGACTACAAACTGAATatgttgctaatgctaacattaaGTGAGCTAACTCTGAGCAGCTACACTCGCTAATCTGTCGTCTGAGGCATGTGAGCACTGAAGGATTCGGCTTTGAATAGTAAAATCTTCTCTCAGCTGTTGTCATGGTAATGCCTCATAGCATCAAGACACACTCCCATTTAACAATGTAATGGCAAGGCTCTGAGGTCAGtaggaacgtgtgtgtgtgtgcacaatttAGTGATACAGTTGTATAGTGTCCTTCAGCTTTAACACAGAGAtaatacagaaaaacataaatacattctACACACATCTATCCATCATCTGTGTGGACAACAATACtgaacagggagagagagagagagagagagagagagagaggaataaagaAAGGCCAAACAAGAaggaaagacaagaaaaaacatacacg
>TU84852
GAATGCACCTCGTTGCTTTTATTAACAGCAGAAACGTATTAACACCTGGAAGCTCAGGCGTCTACAACACTTGGGCAAGAGGAAGATTAGTATGATTTCAGTATTAGAAAAAgagaacaacaataataataataataataataataataataaaagattaaagatGCAAAAGGTGCATCTCATCCATAacccaataaaatatttatcaaagCAGCACCTACTGGTCAGATCTGTCtgttctcacactcacacacacacacacacacacacacacacacacacacacacacacacacaccatagctTAAGATTCTGTACATTTCAATTTTGgctgaactgttcctttaatctAGAGACGTCAGAGCTTtgtcaccatgacaacaactCAAAACAGCACAGGCTTATGTTactgtcattaaaaatgtaaataaactcaAAACTGTGAATCAGGGGTCTGAGATATAAACAACCACTTAACTGGCAGTGACTACAAACTGAATatgttgctaatgctaacattaaGTGAGCTAACTCTGAGCAGCTACACTCGCTAATCTGTCGTCTGAGGCATGTGAGCACTGAAGGATTCGGCTTTGAATAGTAAAATCTTCTCTCAGCTGTTGTCATGGTAATGCCTCATAGCATCAAGACACACTCCCATTTAACAATGTAATGGCAAGGCTCTGAGGTCAGtaggaacgtgtgtgtgtgtgcacaatttAGTGATACAGTTGTATAGTGTCCTTCAGCTTTAACACAGAGAtaatacagaaaaacataaatacattctACACACATCTATCCATCATCTGTGTGGACAACAATACtgaacagggagaagagagagagagagagagagagagagag
>TU84853
GAATGCACCTCGTTGCTTTTATTAACAGCAGAAACGTATTAACACCTGGAAGCTCAGGCGTCTACAACACTTGGGCAAGAGGAAGATTAGTATGATTTCAGTATTAGAAAAAgagaacaacaataataataataataataataataataataaaagattaaagatGCAAAAGGTGCATCTCATCCATAacccaataaaatatttatcaaagCAGCACCTACTGGTCAGATCTGTCtgttctcacactcacacacacacacacacacacacacacacacacacacacacacacacacaccatagctTAAGATTCTGTACATTTCAATTTTGgctgaactgttcctttaatctAGAGACGTCAGAGCTTtgtcaccatgacaacaactCAAAACAGCACAGGCTTATGTTactgtcattaaaaatgtaaataaactcaAAACTGTGAATCAGGGGTCTGAGATATAAACAACCACTTAACTGGCAGTGACTACAAACTGAATatgttgctaatgctaacattaaGTGAGCTAACTCTGAGCAGCTACACTCGCTAATCTGTCGTCTGAGGCATGTGAGCACTGAAGGATTCGGCTTTGAATAGTAAAATCTTCTCTCAGCTGTTGTCATGGTAATGCCTCATAGCATCAAGACACACTCCCATTTAACAATGTAATGGCAAGGCTCTGAGGTCAGtaggaacgtgtgtgtgtgtgcacaatttAGTGATACAGTTGTATAGTGTCCTTCAGCTTTAACACAGAGAtaatacagaaaaacataaatacattctACACACATCTATCCATCATCTGTGTGGACAACAATACtgaacagggagaagagagagagagagagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84851 True 915 lncRNA 0.38 2 26550094 26551030
TU84852 False 867 TUCP 0.39 3 26537102 26551030
TU84853 False 867 TUCP 0.39 3 26472080 26551030

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding downstream 19249 26446458 ~ 26452831 (-)
sdr39u1 sdr39u1 coding downstream 104105 26338735 ~ 26367975 (-)
parp2 parp2 coding downstream 142805 26319287 ~ 26329275 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding downstream 499075 25970634 ~ 25973005 (-)
tnn tnn coding downstream 539319 25904440 ~ 25932761 (-)
sppl2 sppl2b coding upstream 27764 26578794 ~ 26595990 (-)
ccnl1b ccnl1 coding upstream 121717 26672747 ~ 26678848 (-)
slitrk3b LOC108267197 coding upstream 157052 26708082 ~ 26712304 (-)
copa copa coding upstream 219552 26770582 ~ 26786518 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding upstream 236057 26787087 ~ 26790914 (-)
G71589 NA non-coding downstream 7762 26464030 ~ 26464318 (-)
G71474 NA non-coding downstream 44706 26426258 ~ 26427374 (-)
G71470 NA non-coding downstream 56328 26407975 ~ 26415752 (-)
G71471 NA non-coding downstream 57586 26409175 ~ 26414494 (-)
G71469 NA non-coding downstream 59732 26402539 ~ 26412348 (-)
G71636 NA non-coding upstream 7199 26558229 ~ 26559138 (-)
G71693 NA non-coding upstream 110829 26661859 ~ 26663778 (-)
G71695 klhl6 non-coding upstream 115187 26666217 ~ 26666592 (-)
G71696 NA non-coding upstream 116033 26667063 ~ 26667730 (-)
G71697 NA non-coding upstream 117265 26668295 ~ 26668558 (-)
ltb4r2b NA other downstream 95672 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 1886032 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2167154 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 2940064 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 2954410 23516930 ~ 23517670 (-)
G71832 NA other upstream 545572 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 652753 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 844327 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 845121 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 864237 27415267 ~ 27432678 (-)

Expression


Co-expression Network