G71693


Basic Information

Item Value
gene id G71693
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26661859 ~ 26663778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84978
TGGAATGTCTCATCACCagaacaggctcactgaaatGTAGTTTGCttgaagtgggaaaaaaaaaaaagttagatttcacaaaatttattcatttttaaggcAACAGTTAAAGAGGTTTAATTTGCAGTTATCAGATTGTTagttgaaaaatataaaatatagttatacatgtacaatataaaatattgttatacatgtacataaatataaaaaaaaaataaacaaagtcagAGACAAAAACTTCCTGATTCCTGTTGTGCTAATGGAAATACATCATATACAAAACCATTTCTTACATTTATTAGATTCCTAACACATGATCACACAGACATTAcaggaaaagaaattaaaataaaaaaaaaggaaaacaaaaatccaaaaccTCCTCCGCAGAGATACAGCAGTGTTAAAGAAGACATCGTGCTATGGAAGCCCACATGGGACATGTGAAAGGTGAAGCTCTAGAATGttctcaataataataataataacaataataataataataagcacttCCATAGaaatagggaaaaaagaaagattaaaaaaacaaagagaattATTAAGGATGACACAGACACTCAGGTGGTGTCTGATGTAACCAAGGCAACaacgatgatgatgaaaaacaaaaaaattatgataaaaTACAAGATTTATTACTGTGTAGATTTATAAATCTTACAGTTTGTGGAATACTGAAAGAAAAATCTTTTTGTTTGGAAATTGGAAAGACActagcacacacaaacacgcacacgcgcgctcacacaatcacacacgcacacacacacacacacacacacacacacacacacacacagtcctggcTGCACTTCTGGTTCTGATCAGAAGATTCTAGAACCTTAAAGAACTGCTCACACTGACAGACTTTCATTTCCAGTAAAGTTTACACCCCTAGGTCTCATCCTGGTACGTTTCTATGGCAACCGCACCCAACATCAGCTGGCACTTCAGCGCAGTAATGCTGTTCTATTAACCCTGGGATGTTTACAGTGACAGGAATCGGAGCCAATGCTGGTGATGTAAAGTGGGTGGGGCCGGCAAACCAGGAAAAAAGGTGTAAAGATAAGAGAGTTTACCTTTACGCAAATGTTATACGAAATGGGGCCAGCAAAAAGTTTCGAGATGTTTTACTTTAGGCAAAATTTATGCCAACCAATAGGAGTGAGGGACGGTGTTTGACTTTCTCACCACCCCTCCTGAGAAGAACTGAAGAGCTCAATGGAGCAGAACTGAAGAGTTCAATGAATGATTTCCCttcagaatgttttatttttattcagactTAACCGTGTTCGCAGTTTTGCACTCGTTCACATGTTCAGTAATATCACTATAAAGTGACTCTTCAGGAAAGCGCCCCCTGTTTGGCTGCAGCTGCTCTACAAGTTAAAACCTCATTTCTAGCCTCATGTGCTTGTCGCGGTGACCGTTGTGTTTATTAGTGATTATCCGGTGGTATTTAGCCATTAGCGTGGTTCACTGTCAGAAAATTTACTGCATTTCTCCCCTCTTCCTCTGCTGGTAGCGTAAAGTTGCCAAAGTAACTCAGAGGCCCTGCAgctccacactcacacacacacactgctgtgtctgtctaataactttaataataataaaataatcagatttgTGTGAGGACACGTCCACATCTGACCATGCAGCGGTTTGGTTGATTGCATATATacgataaaacacacacacacacacacacacacacacaaacccacacccAGTAGGCGGGCGGGGCATGTCCGGGGTTAGCGGCTACTCTTCATGGCCTCCTTGGCGGCAAGGATGAGGGGGGTGAGACTGGACAGAGGCTTCGCTAGCTTCAGGAACGAGTGCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84978 True 1876 lncRNA 0.40 3 26661859 26663778

Neighbor

gene id symbol gene type direction distance location
sppl2 sppl2b coding downstream 65869 26578794 ~ 26595990 (-)
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding downstream 209028 26446458 ~ 26452831 (-)
sdr39u1 sdr39u1 coding downstream 293884 26338735 ~ 26367975 (-)
parp2 parp2 coding downstream 332584 26319287 ~ 26329275 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding downstream 688854 25970634 ~ 25973005 (-)
ccnl1b ccnl1 coding upstream 8969 26672747 ~ 26678848 (-)
slitrk3b LOC108267197 coding upstream 44304 26708082 ~ 26712304 (-)
copa copa coding upstream 106804 26770582 ~ 26786518 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding upstream 123309 26787087 ~ 26790914 (-)
map1sb LOC108267453 coding upstream 128245 26792023 ~ 26805367 (-)
G71636 NA non-coding downstream 102721 26558229 ~ 26559138 (-)
LOC113540239 NA non-coding downstream 162592 26497033 ~ 26499267 (-)
G71589 NA non-coding downstream 197541 26464030 ~ 26464318 (-)
G71474 NA non-coding downstream 234485 26426258 ~ 26427374 (-)
G71470 NA non-coding downstream 246107 26407975 ~ 26415752 (-)
G71695 klhl6 non-coding upstream 2439 26666217 ~ 26666592 (-)
G71696 NA non-coding upstream 3285 26667063 ~ 26667730 (-)
G71697 NA non-coding upstream 4517 26668295 ~ 26668558 (-)
G71698 klhl6,LOC107591321,LOC107738218,LOC107684416 non-coding upstream 6489 26670267 ~ 26671138 (-)
G71699 NA non-coding upstream 7482 26671260 ~ 26671536 (-)
G71596 NA other downstream 110829 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 285451 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2075811 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2356933 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3129843 23531238 ~ 23532016 (-)
G71832 NA other upstream 432824 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 540005 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 731579 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 732373 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 751489 27415267 ~ 27432678 (-)

Expression


Co-expression Network