G71698 (klhl6,LOC107591321,LOC107738218,LOC107684416)


Basic Information

Item Value
gene id G71698
gene name klhl6,LOC107591321,LOC107738218,LOC107684416
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26670267 ~ 26671138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84984
GAGAGATACACTTCATTTCTGAAGGTGACGCAGGCGAACTCCACCCACTTCCTGGTGTCACTCTCAGACTCGGTGTCAGTGCCGGGCAGTTTGGCCACCTCCAGGCGACTCCGGCGTAGGGGGTCCAGACATGTCACTTCCGAAACAAACTTCTCATCTTTAGTGCAGCCACCGATGATCACAAACACCTCCGACTGGTACTGATGGAGGCGGGGCTTAGTGCGCTCTGAAatcacctgtacacacacacacctcagactTATATCGATGGAGGAGGGGCTTAGTGTGTGCCAAAATCACCTTTACACACAAGGATCCAAACCACATGCTGTAATGACTTTTCTATCAGACattagtgtttgggacacagccagtatattgtgtgtatgtgattacagtgttgtgtgtgtgtgttgaaaccCCACCTCGCTGCCAGACAGGTGATAAGCTCGAGCCTCCTGTAAAAGTGGGAATACCTCGGTGCAGGAGCGGATCATGGCGTCACTCTCCACCTTCTCCAGGAAGTAGCAGGGTTCTAGCAGTGGGAGTCTCACGTGTGTGAGAACCCGGGCCAGCGAGGGCAGGCGCTCGGCTTGACGCGCCTTCACCCAGTGCATGGCCGCCTcgtacacacactcctcattGCTCACGGCCAGCTCATCTCTCCGCAACAGCTCCACCAGCACGTCCAGCGGCAGCTCCAGAACCTCATCATGCTCCACCACACGCCCGAAGTTCTGCATGATGTACTCATGCACACGAGCCTTCAGCTCCACCAGCGAATGTGTGTCAGCCAGACGCAGAATCCCAACACAGTTCTCTGGGTGGAGTGACTCAGCCAGGAAATGAGCGCATGCCTCCATCACCCGCGG

Function

symbol description
klhl6 Predicted to act upstream of or within B cell receptor signaling pathway and germinal center formation. Orthologous to human KLHL6 (kelch like family member 6).

NR:

description
PREDICTED: kelch-like protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84984 True 872 lncRNA 0.55 1 26670267 26671138

Neighbor

gene id symbol gene type direction distance location
sppl2 sppl2b coding downstream 74277 26578794 ~ 26595990 (-)
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding downstream 217436 26446458 ~ 26452831 (-)
sdr39u1 sdr39u1 coding downstream 302292 26338735 ~ 26367975 (-)
parp2 parp2 coding downstream 340992 26319287 ~ 26329275 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding downstream 697262 25970634 ~ 25973005 (-)
ccnl1b ccnl1 coding upstream 1609 26672747 ~ 26678848 (-)
slitrk3b LOC108267197 coding upstream 36944 26708082 ~ 26712304 (-)
copa copa coding upstream 99444 26770582 ~ 26786518 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding upstream 115949 26787087 ~ 26790914 (-)
map1sb LOC108267453 coding upstream 120885 26792023 ~ 26805367 (-)
G71697 NA non-coding downstream 1709 26668295 ~ 26668558 (-)
G71696 NA non-coding downstream 2537 26667063 ~ 26667730 (-)
G71695 klhl6 non-coding downstream 3675 26666217 ~ 26666592 (-)
G71693 NA non-coding downstream 6489 26661859 ~ 26663778 (-)
G71636 NA non-coding downstream 111129 26558229 ~ 26559138 (-)
G71699 NA non-coding upstream 122 26671260 ~ 26671536 (-)
G71700 NA non-coding upstream 503 26671641 ~ 26671845 (-)
G71704 NA non-coding upstream 17932 26689070 ~ 26690394 (-)
G71705 NA non-coding upstream 23808 26694946 ~ 26696321 (-)
G71707 NA non-coding upstream 25755 26696893 ~ 26697097 (-)
G71596 NA other downstream 119237 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 293859 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2084219 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2365341 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3138251 23531238 ~ 23532016 (-)
G71832 NA other upstream 425464 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 532645 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 724219 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 725013 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 744129 27415267 ~ 27432678 (-)

Expression


Co-expression Network