G71705


Basic Information

Item Value
gene id G71705
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26694946 ~ 26696321 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU84992
atgtttatttttttattagtttcctCCGGTTTATAAATTACACGttcaaaaagaggaaaaagggaaaaagacaaaaagatgaaagaaacaaaagacttttgtatattacattataacaggAATTTCCCATAAACCCTCACACTCATCCtctctctcgctctctctctcgctctctctctcgctctctctctcggtttCCTAGGCAACGGTTTTGAAGGTCTGCAGGATCAGGTTTGTTTGGTGGATCAGCCGGTTGGCActaatgaacacatttattGCTTTTCCGTCTTTGAAGTAGGTCTTCAGTGTGTCGCTGAAACTTTTCGAGTATTTCACAAATTCCTTCTTTTGGTGTTCAAGCGcctgcaaacaaacaaacaaacaaataaaggcTGCAACACTGATGGTCTGTGATCACATTATCCCGCTTTCGCTGCTACAGATAACGAGTTCAGTAATTAAAAAGCTGTACTAATCTTATGTTAGATTAATTTTACACTAATCTTACATTAATCCTACAGTAATAGTACATTAATCTTATGTTAATCTTACgcactgtggaaaaaaatgcactggTGTTAAGTGGGTGTTAGATTAGCCTTAGCTTTGTGTTAAATGGGCACTGGGTTAGTTTAGCATTAGATGAATGGTATATTAGCATTAGCTGTGTTTTAGGTGGACATTTCATACGGGATTATTGTAGACATCTGGAAGCTCAAATTTACCAGGAAGCACTGCTGCAATCTGTTTCCTTTTACAAAATGGCAGACATTTACCTTCCATTTACATTCCAGCTAATCCTATATTAATCCTACGCTtcttttatgttaatgttacatATTCTTACACAATCTTATATTAAT

Function

NR:

description
PREDICTED: obscurin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84992 True 863 lncRNA 0.36 3 26694946 26696321

Neighbor

gene id symbol gene type direction distance location
ccnl1b ccnl1 coding downstream 16098 26672747 ~ 26678848 (-)
sppl2 sppl2b coding downstream 98956 26578794 ~ 26595990 (-)
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding downstream 242115 26446458 ~ 26452831 (-)
sdr39u1 sdr39u1 coding downstream 326971 26338735 ~ 26367975 (-)
parp2 parp2 coding downstream 365671 26319287 ~ 26329275 (-)
slitrk3b LOC108267197 coding upstream 11761 26708082 ~ 26712304 (-)
copa copa coding upstream 74261 26770582 ~ 26786518 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding upstream 90766 26787087 ~ 26790914 (-)
map1sb LOC108267453 coding upstream 95702 26792023 ~ 26805367 (-)
LOC113540659 LOC108267452 coding upstream 112335 26808656 ~ 26810250 (-)
G71704 NA non-coding downstream 4552 26689070 ~ 26690394 (-)
G71700 NA non-coding downstream 23101 26671641 ~ 26671845 (-)
G71699 NA non-coding downstream 23410 26671260 ~ 26671536 (-)
G71698 klhl6,LOC107591321,LOC107738218,LOC107684416 non-coding downstream 23808 26670267 ~ 26671138 (-)
G71697 NA non-coding downstream 26388 26668295 ~ 26668558 (-)
G71707 NA non-coding upstream 572 26696893 ~ 26697097 (-)
G71734 NA non-coding upstream 151025 26847346 ~ 26859455 (-)
G71732 LOC108267445,LOC107591334,LOC107684401 non-coding upstream 156946 26853267 ~ 26856672 (-)
G71764 NA non-coding upstream 198360 26894681 ~ 26895564 (-)
G71765 NA non-coding upstream 238669 26934990 ~ 26935197 (-)
G71596 NA other downstream 143916 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 318538 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2108898 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2390020 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3162930 23531238 ~ 23532016 (-)
G71832 NA other upstream 400281 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 507462 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 699036 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 699830 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 718946 27415267 ~ 27432678 (-)

Expression


Co-expression Network