G71827


Basic Information

Item Value
gene id G71827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27073841 ~ 27074076 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85154
TTTTGTAGTCACAGGCAGCTCTAAGATGTCCATAGCCACTTGTTCAAATGGCCGCACTGACTGGGATCCACCCATCGGCGCATGGTGGGCTGGAACAGGACTGCGCCGTGTCTGACATGCCTTGCACTGCTCAGACCATGCTTTGATGTGCCTGTACATGGAAGGCCAGTAACAAAATTGTCTTGCCCGTTCCCACACACGCTCCGAAGAGAAATGGGCCGAAGCTGGGGCACCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85154 True 236 lncRNA 0.55 1 27073841 27074076

Neighbor

gene id symbol gene type direction distance location
LOC113540681 NA coding upstream 35482 27030740 ~ 27038359 (+)
LOC113540685 LOC108267717 coding upstream 60196 26983741 ~ 27013645 (+)
LOC113539948 NA coding upstream 121984 26941327 ~ 26951857 (+)
gpr160 gpr160 coding upstream 171475 26900847 ~ 26902366 (+)
zgc:101744 LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183 coding upstream 208326 26857531 ~ 26865515 (+)
LOC113540738 NA coding downstream 39072 27113148 ~ 27113254 (+)
ebna1bp2 ebna1bp2 coding downstream 69988 27144064 ~ 27151124 (+)
LOC113540389 LOC108267490 coding downstream 99985 27174061 ~ 27237097 (+)
LOC113539951 LOC108267487 coding downstream 191494 27265570 ~ 27270794 (+)
LOC113539841 LOC108267486,LOC107719261,LOC107593886,LOC107671769,LOC107559363,LOC107754779 coding downstream 200096 27274172 ~ 27286654 (+)
G71819 NA non-coding upstream 30929 27042703 ~ 27042912 (+)
G71557 NA non-coding upstream 217236 26808057 ~ 26856605 (+)
G71550 NA non-coding upstream 287281 26784572 ~ 26786560 (+)
G71519 NA non-coding upstream 405713 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 522815 26472575 ~ 26551026 (+)
G71864 NA non-coding downstream 121925 27196001 ~ 27196373 (+)
G71868 NA non-coding downstream 143276 27217352 ~ 27217839 (+)
G71869 NA non-coding downstream 144151 27218227 ~ 27218455 (+)
G71874 NA non-coding downstream 155786 27229862 ~ 27230100 (+)
G71941 NA non-coding downstream 209984 27284060 ~ 27284463 (+)
gng7 NA other upstream 192371 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 698015 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 781057 26288290 ~ 26292784 (+)
G71385 NA other upstream 844650 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 849803 26216064 ~ 26224038 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 310731 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1228775 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1242328 28316404 ~ 28338173 (+)
gng5 NA other downstream 1684469 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1718771 28792847 ~ 28797159 (+)

Expression


Co-expression Network