G71868


Basic Information

Item Value
gene id G71868
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27217352 ~ 27217839 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85201
CCTGCTGTTTCTTGATGGAGGTTGTAATGAAGCCTCAGGAGTTCAAACTCTGAGATTTAATTGGTGCCGTGACCTGGATCAGCTTCTACTGATTGCTGTAAGCTCCTGCTGCTGCACAAGATAGAGGCTCAATAAGCAGAAAAGTCAAACGAAGGTGAGTGGAACTCAGCAGAGCTGCAGTACAGGCTGTTAGACTCACTTTCTCAAAGGTCAAATAACAGCAGCAGAAAGTCGTCCCTGAAGTCCTGAATGCATTAAGAGGCAGCTCAGCAGGTGGCGACAATCTGTTCATACTTACAAAAAAACTTTCAGCGAACCTCAGTGATccaataatgttattttaattcttCACTTTGAACTTCCAACAGCTTCATTTGCATCTCAGCTTGATAATGCTGGAAGAGTTTATCTGCTAATTATAGCAGCGCTCTGCTCTTTTTCAACACAGCAGCATTATGAATAAAACTGTGAAAGTTCTAATGTTTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85201 True 488 lncRNA 0.42 1 27217352 27217839

Neighbor

gene id symbol gene type direction distance location
ebna1bp2 ebna1bp2 coding upstream 66228 27144064 ~ 27151124 (+)
LOC113540738 NA coding upstream 104098 27113148 ~ 27113254 (+)
LOC113540681 NA coding upstream 178993 27030740 ~ 27038359 (+)
LOC113540685 LOC108267717 coding upstream 203707 26983741 ~ 27013645 (+)
LOC113539948 NA coding upstream 265495 26941327 ~ 26951857 (+)
LOC113539951 LOC108267487 coding downstream 47731 27265570 ~ 27270794 (+)
LOC113539841 LOC108267486,LOC107719261,LOC107593886,LOC107671769,LOC107559363,LOC107754779 coding downstream 56333 27274172 ~ 27286654 (+)
LOC113540484 leprot,LOC108430744 coding downstream 95238 27313077 ~ 27318012 (+)
pde4bb pde4bb,LOC108267485,LOC108430746,LOC107681771,LOC107719260,LOC107593782,LOC107671696,LOC107559365 coding downstream 107912 27325751 ~ 27371031 (+)
tctex1d1 tctex1d1 coding downstream 192384 27410223 ~ 27412780 (+)
G71864 NA non-coding upstream 20979 27196001 ~ 27196373 (+)
G71827 NA non-coding upstream 143276 27073841 ~ 27074076 (+)
G71819 NA non-coding upstream 174440 27042703 ~ 27042912 (+)
G71557 NA non-coding upstream 360747 26808057 ~ 26856605 (+)
G71550 NA non-coding upstream 430792 26784572 ~ 26786560 (+)
G71869 NA non-coding downstream 388 27218227 ~ 27218455 (+)
G71874 NA non-coding downstream 12023 27229862 ~ 27230100 (+)
G71941 NA non-coding downstream 66221 27284060 ~ 27284463 (+)
G71939 NA non-coding downstream 69334 27287173 ~ 27289705 (+)
G71942 NA non-coding downstream 75517 27293356 ~ 27295364 (+)
gng7 NA other upstream 335882 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 841526 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 924568 26288290 ~ 26292784 (+)
G71385 NA other upstream 988161 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 993314 26216064 ~ 26224038 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 166968 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1085012 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1098565 28316404 ~ 28338173 (+)
gng5 NA other downstream 1540706 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1575008 28792847 ~ 28797159 (+)

Expression


Co-expression Network