G71939


Basic Information

Item Value
gene id G71939
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27287173 ~ 27289705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85275
agagaattttaataatgttttaatgaatttgACAAAGACGTCAATAACAAAGCAGCAAATTGGAACATCACGTTTGATTATTGATAATGTCCAGAACCCTATACCTGCTATTTGACGATTCTGTGCAAACTGCAGAAGTTAACATGACGCATAATTTAATAGATCtatgtaaaacataaaaaaatatacttaaaGGCAAAATGGCAATGGTATAGTGGCAGTGGTGTGGTGGCAATGGAAGCCTGATTCTGCCACACATGGgaaaatattacacagattATCTCGCAACTGTGACTTTTTATCCTGAAGGTTAATCTCTCACATTTGCAACTTTTTATCTCACAATTGTTAATTAGTGTGACATTTTGCTTTCGCTTATTAGAGTATCCTTAACCCATAACTAAACTATTTATATCCCTTGCTTACGCACTGCTGCGTACGCTTGTGTTGTTGTGGTTTGATTATTGGAAACGGAAGCACTAAGTCAcgtgtgtgtgatattaacaagtagaaaaaaaataacacaagtactagattttaaaaaaaagtcgcaAGGGCATGATATTACCTCGCAACTGCAAGATCATTTTCTGcataatattttctcatatgAGGTAGAATCAAGCTTCCATACCAGGGAGCGTGACGAATGTTAAGTGTAAAGCCGGGATGTGCCAGTAATCGATTATACATCAACTGGCACAGGAGGAATGGGAAGAAGCAGATTTTATAGGTCATGGTGTTTATCCCAAACTCAAATCTAAGTATGCGACAGCAGCTGTCTCATAATATCATGCCACTGTTTCGCATAATGCAGCaccacagatttttttcacctgatttattaactcCTATGGAGAACTGCGTCTTTCACACAATCTGTTTTTGTAATTTGGGGTAGTTTTCACCTAAAAGTTTAAAATAGTGTGTGGAGTCAAGGCGAATAGATTAATTTATCACCTGACATGAAAGTAAGGAACAGAGATTGTGTGTAAAATACAACTatgaccatttttaaaaatcatttctcCAAATTATGTCTCAGCATTCTCAAAAATAACCAATTTCTCAAAACTTAACTTCGAACAATTTTGTTTCATACTTACACCTCCGACATCGAAAGCATTTTAATTTACcttataaacacacatgctAATATCTGCACTcttattttacattcatatttaattttgaaCAGCTTTCTGACTCACTGCCTTTAACCAGCATTATACTTGACATGTAATTTCAATGTAGGTTTAGTTTCACTCTTACAGATGTCTCTTTGAGACCTGAACTCACAGCTATCGAGAACAATTAGCGCACACAAAAATCCTGTTTAAATATTGCTTCCTTCCCTGACTTAGCACATGATGTTATTAATGCaaacaataatttataaatCACGTCCCACTATATGCACACGCAACCACTATATGCTAAATACACAGGCAAGTAATAGATAAACCAATAAACTGGCAATTCGTAACCAATAAACTGGCAAATTGCAGACCATgctttatttagaaaaattgttacttttttgtttgtttgttttttaaaagtaagAATGTAGCTGTATAGAATGTAGTATGGTTCTTGTAAAACTAGTGACACTGGGCTAAATCGACTTTAAATCAGTTACCACATACATTCATTATTTCGTACACAGAACAATTTTCCTCCACTGTCTTTGTACAGAATAATGATTTACACACCAGAgcattttactgtttaaagtaaatcaaataaatctTAGTAACTCAGTCTGATTCTGTCGTGACATACTTTAAATAAACTGCCTTAAAGGCACAATCAACGATTTTAGCCGGGCTGTTTCATAAATCAAAAGGATCTCAGTGTCCTCTCCAAAGCCATGCCCCTTAAACATGCACGTGTACTGTCCAAATGCTAATGCAAGCTGTGGGGCTTtctttgtcctgattggttaattgtCGGTGGTCCACatcttgtttcttttgtttatattcTGGAGCGCTATGGAGGTCAAAGTTTCTCCTCTGAGGAGATGTCCTAACTCAAACATCACTGATTACAGCTGTAATGTCTGAAAAGacatccctaatgagtgagttTGCTTAAAATCCTGCAGAATAAGAACACTTTTAGGGTATTATTGTGGACTTTTATATGGATATATGAACATGTAACATCTAATGTAAAAGTATATCACCCCAAGGATAATTATTcttctaattatttttaatttgaccAGATTCTGACTGTTTAAGTGCTCAGAGGTCTTCAGATGTAATAATACAACCTGCTCTATTGCCAATGAATAATTTTGGATGAGTTCAGGCCTTAAAAAAAGATAAGACACGATATGCATGACagtaaaagtattaaaaagtgagcGATTTAACAGCTGTGCACTAAACTGAGTTCTTCGCTCGACAAGAGACGCTCGAACACCTCGATCAGGCCTTTGAAGTCTACACGGTCCTCTGGAGCGTGAACCCAGCACCTCCGCATCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85275 True 2498 lncRNA 0.36 2 27287173 27289705

Neighbor

gene id symbol gene type direction distance location
LOC113539841 LOC108267486,LOC107719261,LOC107593886,LOC107671769,LOC107559363,LOC107754779 coding upstream 519 27274172 ~ 27286654 (+)
LOC113539951 LOC108267487 coding upstream 16379 27265570 ~ 27270794 (+)
LOC113540389 LOC108267490 coding upstream 50076 27174061 ~ 27237097 (+)
ebna1bp2 ebna1bp2 coding upstream 136049 27144064 ~ 27151124 (+)
LOC113540738 NA coding upstream 173919 27113148 ~ 27113254 (+)
LOC113540484 leprot,LOC108430744 coding downstream 23372 27313077 ~ 27318012 (+)
pde4bb pde4bb,LOC108267485,LOC108430746,LOC107681771,LOC107719260,LOC107593782,LOC107671696,LOC107559365 coding downstream 36046 27325751 ~ 27371031 (+)
tctex1d1 tctex1d1 coding downstream 120518 27410223 ~ 27412780 (+)
bcl6ab LOC108268038 coding downstream 131580 27421285 ~ 27426694 (+)
fam78ba LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240 coding downstream 151804 27441509 ~ 27447248 (+)
G71941 NA non-coding upstream 2710 27284060 ~ 27284463 (+)
G71874 NA non-coding upstream 57073 27229862 ~ 27230100 (+)
G71869 NA non-coding upstream 68718 27218227 ~ 27218455 (+)
G71868 NA non-coding upstream 69334 27217352 ~ 27217839 (+)
G71864 NA non-coding upstream 90800 27196001 ~ 27196373 (+)
G71942 NA non-coding downstream 3651 27293356 ~ 27295364 (+)
G71977 NA non-coding downstream 81768 27371473 ~ 27371678 (+)
G71980 NA non-coding downstream 91143 27380848 ~ 27381072 (+)
G72005 NA non-coding downstream 138714 27428419 ~ 27429222 (+)
G72012 NA non-coding downstream 169965 27459670 ~ 27460197 (+)
gng7 NA other upstream 405703 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 911347 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 994389 26288290 ~ 26292784 (+)
G71385 NA other upstream 1057982 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 1063135 26216064 ~ 26224038 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 95102 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1013146 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1026699 28316404 ~ 28338173 (+)
gng5 NA other downstream 1468840 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1503142 28792847 ~ 28797159 (+)

Expression


Co-expression Network