G72012


Basic Information

Item Value
gene id G72012
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27459670 ~ 27460197 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85362
cctgtatactgtttatctcaacttaCTGCActataattcttatttatttcaacttaattgccatttgcattactggtatgcatCATAGTGTTCACCTTTACCTGTACACTGGtaacttattgcaccataaccttATCACCTCATTgaacttatttgctatttgcagtATTGGTTGGATGCTTGaactgcatttcgttgtctctgtactcatactctgacaatgacaataaagttgaaccgaACCTAacctatacagttgtgtgcttccaacttagTGTCAACAGCTGTTTCATGCAAAAAGccatgtttacatgtttttgttttgtatggAGTTTTTATATCAATAAAACTTTCCAAAAAGAGAATTTTGTGCTCATTATGATGCTATTTCTAAAAGAGTTAATAAACTTTTAAAGTCATAATCTATCTCCTCGCTGTTTCTTGAACATCTATAATACCTcagatttgttgttgttgttgttgttgttattgttgttttaatcCAAACCGGAGTTATTACGAAGTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85362 True 528 lncRNA 0.33 1 27459670 27460197

Neighbor

gene id symbol gene type direction distance location
fam78ba LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240 coding upstream 12422 27441509 ~ 27447248 (+)
bcl6ab LOC108268038 coding upstream 32976 27421285 ~ 27426694 (+)
tctex1d1 tctex1d1 coding upstream 46890 27410223 ~ 27412780 (+)
pde4bb pde4bb,LOC108267485,LOC108430746,LOC107681771,LOC107719260,LOC107593782,LOC107671696,LOC107559365 coding upstream 88639 27325751 ~ 27371031 (+)
LOC113540484 leprot,LOC108430744 coding upstream 141658 27313077 ~ 27318012 (+)
imp3 imp3,LOC107671714 coding downstream 71 27460268 ~ 27466505 (+)
zgc:55943 c7h1orf21,zgc:55943,LOC108430752,LOC103042176,LOC107709356,LOC107671715,LOC107559369,LOC107593773 coding downstream 7851 27468048 ~ 27477673 (+)
trnat-ugu_5 NA coding downstream 29056 27489253 ~ 27489325 (+)
abi1b abi1b,LOC108267643,LOC107671751,LOC107559371,LOC108430754,LOC107681778 coding downstream 35651 27495848 ~ 27508199 (+)
si:ch211-252f13.5 LOC108267682 coding downstream 49653 27509850 ~ 27517204 (+)
G72005 NA non-coding upstream 30448 27428419 ~ 27429222 (+)
G71980 NA non-coding upstream 78598 27380848 ~ 27381072 (+)
G71977 NA non-coding upstream 87992 27371473 ~ 27371678 (+)
G71942 NA non-coding upstream 164306 27293356 ~ 27295364 (+)
G71939 NA non-coding upstream 169965 27287173 ~ 27289705 (+)
LOC113540179 NA non-coding downstream 23623 27483820 ~ 27487711 (+)
G72118 NA non-coding downstream 92930 27553127 ~ 27555706 (+)
LOC113540592 NA non-coding downstream 95888 27556085 ~ 27559427 (+)
LOC113540695 NA non-coding downstream 96320 27556517 ~ 27556648 (+)
LOC113540696 NA non-coding downstream 97568 27557765 ~ 27557902 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 53272 27384807 ~ 27406398 (+)
gng7 NA other upstream 578200 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1083844 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1166886 26288290 ~ 26292784 (+)
G71385 NA other upstream 1230479 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 842654 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 856207 28316404 ~ 28338173 (+)
gng5 NA other downstream 1298348 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1332650 28792847 ~ 28797159 (+)
G72873 NA other downstream 1414159 28874356 ~ 28912104 (+)

Expression


Co-expression Network