tsen15 (tsen15)


Basic Information

Item Value
gene id tsen15
gene name tsen15
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27474765 ~ 27483833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85461
TCATGATTTCTTCATTGTGGAATAATTTTTGGCACAAAGTTTGGGCACTTCGTACATATGGTATGAGTTATTTAaggataaaaaacaaaaaggaaatgcAGACATATTTGTGCAGTTGTTATGTTTTTCTTGCTCGAGTCTGATTGATGTTTCTGTTTCCTAACACACAGGGCTGAAATTAGCGCTGGGGTCTCACACGGgaagaagaacaaaaagaagaagcaaaatGTCCAACAAATGTTTCATTCTGCACGTGCAAGAGATGTAAAGCCACCGAGAGGACGTGAcacatcctttttttaaacaaaaaaaaaagtccaggaCAGTGTTATGTTCATGGCTCTTTCTCAAAAATGTTGAGAAACACAAGAGAAAGGCTTAGTGTAAGGCAAGGGCACTGTATCAACGAAGATGCCAGACGTCTGTCCCACGTCCCCTTTTCTCCTCCCCTCCAGACGTCTTTCCGCGGTCGGAGCGGAGCGCTGATCGCTGAATGTAAACAGGAGGGCTCGATGGTGGTGGGGGTAAACTCGCTCAGCGCTCAGAGTAGGGGAAAAGGAGACGAGGGAAGGAGTGATCATCTCGAGGAGGAGTAGAGGTAAAACAGTGTCAGGTTATGTCACGTCCTCCTCCTCCGAACAGTAGTCACGTCCCTGaaggagagggg
>XM_034303666.1
ACTGTTCGcgtttttaaaagtttttctttctaCTTGGAAAGTGTTGGGAGGAAAAATATCGCGATGGACGAAGAAAATCGAGCAGCGGCTTCGAACTGGATCACTCAGCATCCCGTGTACCAGAACCTGATGAATCTGGGTGTAGACGACAGCGCGCAGGTTTACGGAGCGTTCCTGGTTTACCTCGACCTGACAGAAGTGCGGCGTTGGACAGGCGTAGTCCCAGTGCCGTACCCTGAACTGAAGGCTGTTCTGCTGGAAGGCCGTGAAAAAGAAGGCGAGGTGGTTCAGGTGGTTTATCCACTTCCTGCTCACAGAAGCGTCAGtcacagagattTGAGGTGCATTGTGGGTCGTGGAACTCCCATGCTCCTTTGCGCCGTGGCGTCAGACTCCACGCTTGTGTATCAGCGGCTGAGCGACGGCCTGGTGACCCCTGACCCCCCTGTGGACATCAAAGACCTGGGACGCCGACAACACCGCAAACGCAGACTCcaaacgtgaaaaaaaaaaaaacgctggtCTCGAGTTTGTTAAAGGGCTGAAATTAGCGCTGGGGTCTCACACGG

Function

symbol description
tsen15 Predicted to enable nuclease activity and nucleic acid binding activity. Predicted to act upstream of or within mRNA processing and tRNA splicing, via endonucleolytic cleavage and ligation. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TSEN15 (tRNA splicing endonuclease subunit 15).

NR:

description
tRNA-splicing endonuclease subunit Sen15

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0000213 tRNA-intron endonuclease activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85461 True 667 lncRNA 0.46 2 27474765 27477666
XM_034303666.1 False 569 mRNA 0.53 5 27477467 27483833

Neighbor

gene id symbol gene type direction distance location
slc35a3b LOC108267645 coding downstream 19052 27447255 ~ 27455713 (-)
cmpk cmpk1,cmpk,LOC107719256,LOC107681787,LOC107559368,LOC107671754 coding downstream 33271 27433692 ~ 27441494 (-)
insl5b LOC108268041 coding downstream 60201 27413456 ~ 27414564 (-)
si:ch211-107p11.3 LOC108267482 coding downstream 89232 27381175 ~ 27385533 (-)
LOC113539949 LOC108267483 coding downstream 163789 27287161 ~ 27310976 (-)
acbd5b NA coding upstream 944 27484777 ~ 27494927 (-)
anxa13l anxa13,anxa13l,LOC108267681,LOC103040954,LOC107727547 coding upstream 37857 27521690 ~ 27531090 (-)
gpr158b LOC108268005 coding upstream 101741 27585574 ~ 27619191 (-)
trnat-ugu_7 NA coding upstream 137223 27621056 ~ 27621128 (-)
trnat-ugu_9 NA coding upstream 140903 27624736 ~ 27624808 (-)
G72094 NA non-coding downstream 29651 27444743 ~ 27445114 (-)
G72074 NA non-coding downstream 67946 27403137 ~ 27406819 (-)
G72073 NA non-coding downstream 72130 27401670 ~ 27402635 (-)
G71955 NA non-coding downstream 188067 27286239 ~ 27286698 (-)
G71952 NA non-coding downstream 191108 27281049 ~ 27283657 (-)
G72517 NA non-coding upstream 85411 27569244 ~ 27970795 (-)
G72607 NA non-coding upstream 429037 27912870 ~ 27958488 (-)
LOC117597146 NA non-coding upstream 490637 27974470 ~ 27985856 (-)
G72604 NA non-coding upstream 527851 28011684 ~ 28012804 (-)
G72652 NA non-coding upstream 583749 28067582 ~ 28068084 (-)
LOC113540508 LOC108268039 other downstream 42087 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 78542 27396151 ~ 27396223 (-)
trnat-ugu_3 NA other downstream 79336 27395357 ~ 27395429 (-)
G71909 LOC108267490 other downstream 270579 27203783 ~ 27204186 (-)
G71832 NA other downstream 373907 27096602 ~ 27100858 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other upstream 63919 27547752 ~ 27555987 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other upstream 532231 28016064 ~ 28041785 (-)
LOC117597043 NA other upstream 714158 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 752353 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 752891 28236724 ~ 28236805 (-)

Expression


Co-expression Network