G72408 (LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784)


Basic Information

Item Value
gene id G72408
gene name LOC108267757,LOC108260929,LOC107751522,LOC107566606,LOC107702784
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28623240 ~ 28627973 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85824
CGCACCTGTACATATCTCCTGCTGGACGTTTGGTGGTTTTCGATCGGTGAGGTTTGGGCTCGCCTGCCAGGTTGATGTCTGAAAGTGACGAGAAATCAGTGATTAATTTAAGATTACAACAATAATTTAGAGAAatcttaacaacaaaaaactgaACGCAACGTTACATTTAATTCTCGCATTGTTAAATTTATTCTCAAGAAGATACTGAATTTATTCTCAAAACATTATTGGCATGGTTACATTTTTTACAAGATTTTATTTGCATCGTTaaaatttatatacaaaaaatatcaaatttatGTACAAGAAGTTACTAGCATAGATAAATTTATTCGTAAGAAATTACTAGCATAGATAAATTTATTCGTAAGAAAATACTAGCATAGTTAAATGCATTCGTAAGTTACTAGCATTGGCAAATTTATTTGAAAGACGTTAGACAAAGTTGGATTGTTAAATTTATTCGCAAATAGTTACGTTTAATTGCAGAAAGTTATTCAAGCattgataaaaatgtattcacaTCATTAAATTTAGCTACCTAAGGTAACAATGCTccacaaacaaataacaaaaatgtagGTGACTGAAGTGATCGAAGTGACATTTCGTATATTAACGCAAGCCTACGTTAGCTAAGTGTTACATTTTGTGCACCATATTTTCTGCAACACTAGCCTGTGTGTGACGATTTACCGATGTTCGCTTGTATTGAGGAGCATTAGTCAAAAAGTTAAGGTAGCTAGACTATTTTGTTAAACGTTAGCTAGCTGTAGCAGATAGCTCGATTTAAGTTGTAATGTCTGGGGCTTGGGTGAGTCGCCCCTCCTGTGTCATCACCCCGCCGATCTACTGATGTATCAAACATTGAACATACAAGTTATGATCCTATAGTGAGAAAAACCACTTCAAGACTGAAAGATCGATAAGGTGAAAGGTGATCGGAAAGTAAAAGCGTAGGGTACGTTCTCACCCAGGACTTGTCCGACAATCATGCGTCCGTCCTCTCCGGCCACGGCGGCTCGAGCGTTCCTCTCGTTCGAGTACTGGACGAAAGCGTAACCTTTGTGGACGGAGCAGCCCACGATCATGCCGTACTTGCTGAAGATGGCCTCCACGTCGGCTTTGGTCACCAGCATGGTGTTCAGGTTCCCAATGAAGACGCGCGAGTTCAGAGAACGAGGGTCCGTCTTATTGGTGACGTTGCTGGCCATATCGCTTGGAGAGCGGCTAGACAAAAATACAACCTCTATCActgattagaaataaaaatcaatatctAATGACAacactaaacattttactgacTTTAGGAAACAGCTGGAGCTATTtccacatattattattattaatactataatTATTCCACAATGCTAATGATTTTGCGATTCTGATCGGTCaggaagtgttgattaattttctattatagCACCATAGTTTACATTAGGGTACATTAACGCACTCGTtaaatacgttatcgtttctatggtaacagttcattcacagggacttgcacaGCAGACACTACAcattaagagttttttttttgtttgtttaaatttacgTACTCGTTGATATGGCgaaactttctgtaaggagacgtttacattaaaatttttggaaggagtctccagtgccagtcagagataaagctgtaaataaATTTTCCAACACGGCAAGCCATCTTATTACCTTCCAGGATGatagaatgactgtttatagcgaCTATAACGTAACCGATAACAGACgttaacttgttttatggacattccacaacattaaatgtaattataaacaggTTAAACACCTGGTACcatgtatcattctttaataaacaaaaattgttagcattggcaggttactgtggtgtaagagctATAAAACGCTTCAGAATAtgttgttactggaaaataatcaacttcaagctGATAACAGTATCCCAGCTCAATCAccgttaattattttcctctaacagcatgacacacagtgtgttattccttatataatggtttttttttttggtttttttttaaaccaacttTAGCATGATTAGAAAGAAAtcataaatgaatgtttttcctGTGGGAACCGTGACAATCCTGAGCACTGggaactaaaaaataaaataaataaatcaaacatttttttttttaaatacatcaatttttttttttttaagttttcacTCActccatggtgtgtgttggcCACTCGTCTGCAGTCGTCCCACAAGATTTACACTGAGGTGAAAAAGCTAGGCAGTTAATTAACCACACACAGTCAATTAGCTCGCTAATGAATTAAACACAGGTGGTCATTAGTGCGCTAGCTAACAGGAACCAGTCAGTTTCTGCATTTTGTTTCAGTCAGAAAAGTGTAAAACGAGAAAAAACTAAACAGCTGTAATGAATTCACTATGAAAGGATCGCTGTTGTGCCTTTACTTTCTGTCtggtttgatttattttatgttttttactcAACAAAATATAACTTCAGTGAAATATTTGATCATAAGCACAGAATGTTAGCATtacacttagaaaaaaaaaatcctctcagaaactAGCAAATTTAGCCATCCAGTCAATTAgctagttaaTTAATCCTCAGTAGTCAGTTGACAATCACTAACCAACATCATTGTTCTAGTTAATTAACGTTAGCGAACCAATAGCTATGTAGCTATTTACCCATAAGCAATTGATTAGCTTTAGGTAATTGGCTAATTAGCTATCTGGTTCATTACATTAATTGGCCATTAGCATTATCAAGTTAGCTAATATGCTGTAGCTAGTAAATTAGCTTAGATAGAGAGCACTATATTGTAGCTTTcgctatgtagtgcactatatagggaaTACACGGCCATTTTGGATATAGCCATGTAGTACACTAGAACAAGGTATAAAAGctatatatagtgcactatatagggacCAGGAGGGTATTTTGGATACAACCATGTCCTGCACTATAAAGATTGTAAAATCTGTTATTTCAAACAAGATGTAGATTTAGTTACACagccatatagtgcactatatagtgagtaAAAGCCAGATTGGGGTTTctgacatgtagtgcactagaacAAGTGTGAAAGGCATCATTTCAGACCAtttatagtgcactatgtagggagtAGGGGGTCATCTTGGATACAGACATGTAGAACATGATACAAGGTGTAAAAGCCATATACAGTGCACTATGTAGAGAGTACAGGAGCCATTTTGGGTTTagccatgtagtgcactagaacAAGTGTGAAAGCTGTTAGTTCAAAATATATACATGCAAGTCCCCTATATAGGGTACAGGGGGGCATTTTGAATTTACACCCACTGAGAGCACTATATAGGAAGTATGCAGCCATTTAGAATTTAGCCATCTAGTACACTACAACAAAAAGAGTAAAGCCAATATTTCAAGCCACTctaagtgcactatatagggaaTAGGGCGCCATTTTGAATTTACACCTACTGAGAGCACTATGAAGAGTGTACAAGCCATATATCGTGCCCTATATAAGTTACAGGGGGCCATTCTGGGGTCActcatgtagtgcactataaaAAGGGAGTAAAATCCATTTTTTCCAAActacatgtagtgcactatatagggaaTAAGGGGCCATTTTGGGTTCACTCATGTAGTACACTATGAAGGgaataaaaatccattttttaaactatataGGGAGTACACAGCCATTTAAGATTTAgccatctagtgcactacaacAAATAGTGTAAAGCCAATATGTCAAACCACTcaaagtgcactatatagggagTAGGGGGGCCATTTTGGATACagccatgtagtgcactatgaaGAGTGTACAAGCCATATATCGTGTTCTATATAGGGTACAGGGGGCCATTCTGGGGTCActcatgtagtgcactataaaAAGGGAGTAAAATCCATTTTTTCAAACTATATAGGGAGTACACAGTCATTTAGCATTTAaccatctagtgcactacaacAAAATAGTGTAAAGCCAATATGTCAAGCCACTTagagtgcactatatagggagCAGGGGGCCATTTTGGATACAGCCATGTAGTGCACTGTAAATGGTGTTAAAGACATATATGTAGCGCCCTGTAGCTGGAGCAGGGGGACATTTAGGATTCACAAATGCAGTGCGCTATAAAGGGTGTAAAAGGAGGATATTACACAGTagctgtagtgcactatatagggagGAGGGAGACATTTTTGGACACAGCCATATAGTGcagtataaacagtgtaaaatgcattatttatggATTAATCCTCTGGGGGTAAAATGAAAGCATTAACTGTTGCtcttaaaaaacaaatccagacaaaaaaatatatacatttgcaaaaatatgtgaaaaaaattttttttttttcctgcaggtcATCAAAACACAGTCTATAAACATGAACCGCACAAATCCTGttcaaaaacaacataaaatctCACATGCTGCCGAAATAAAAGCTAATTCCGCCTTAAAGTGCTTCACACAATCCCGAAAAATGtccagaataataataaaataataataattattatttttattaggaaAAAAGACCTGAAACGCCGCctaaagagaaacaaagacaaCCTGCAGGCCCAAAACTGCACGCGCAAAAAAGCTGCACAGAGGATAAACAggtcaagaagaaaaaa

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein C-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85824 True 4692 lncRNA 0.37 2 28623240 28627973

Neighbor

gene id symbol gene type direction distance location
LOC113540233 NA coding upstream 12083 28602905 ~ 28611157 (+)
rnf32 rnf32 coding upstream 34621 28558278 ~ 28588619 (+)
rbm33a rbm33 coding upstream 154388 28443778 ~ 28468852 (+)
en2a en2 coding upstream 223099 28393936 ~ 28400141 (+)
LOC113540125 LOC108267475 coding upstream 362986 28253028 ~ 28260254 (+)
slc1a7a slc1a7,slc1a7a,LOC107722044,LOC107681716,LOC107671767,LOC107593788 coding downstream 26783 28654756 ~ 28666631 (+)
aldh9a1b aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 coding downstream 63123 28691096 ~ 28699416 (+)
fzr1b fzr1b,LOC108268046,LOC108430732,LOC107719268,LOC107701330,LOC107722096 coding downstream 88291 28716264 ~ 28722857 (+)
si:ch73-344o19.1 NA coding downstream 111153 28739126 ~ 28745646 (+)
otol1a otol1,LOC108267659,LOC107701323,LOC107722646,LOC101471040,LOC102302270,LOC102789861,LOC102202439 coding downstream 151776 28779749 ~ 28784107 (+)
G72378 NA non-coding upstream 44290 28574922 ~ 28578950 (+)
G72336 NA non-coding upstream 151475 28468948 ~ 28471765 (+)
G72276 LOC108267477 non-coding upstream 501098 28114451 ~ 28122142 (+)
G72236 NA non-coding upstream 610781 28011744 ~ 28012459 (+)
LOC113540696 NA non-coding upstream 1065338 27557765 ~ 27557902 (+)
G72422 NA non-coding downstream 23441 28651414 ~ 28651621 (+)
G72428 NA non-coding downstream 30303 28658276 ~ 28658536 (+)
G72472 NA non-coding downstream 159644 28787617 ~ 28791836 (+)
G72869 NA non-coding downstream 234443 28862416 ~ 28901261 (+)
G72872 NA non-coding downstream 245630 28873603 ~ 28873988 (+)
insig1 insig1 other upstream 239818 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 285067 28316404 ~ 28338173 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 1216842 27384807 ~ 27406398 (+)
gng7 NA other upstream 1741770 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 2247414 26353189 ~ 26375826 (+)
gng5 NA other downstream 130572 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 164874 28792847 ~ 28797159 (+)
G72873 NA other downstream 246383 28874356 ~ 28912104 (+)
fubp1 fubp1 other downstream 553794 29181767 ~ 29196149 (+)
asip2b NA other downstream 992020 29619993 ~ 29623797 (+)

Expression


Co-expression Network